RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB30004" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB30004 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1307890 1307890 PRJEB30004_P_NODE_250862_length_321_cov_2.074468_g235235_i0 PRJEB30004 250862 321 2.074468 6.65904228 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 56.5 0.002   NTclustered gi|2874253689|emb|OY969415.1| 157466 g235235 i0 100 0.0934579439252336 30 0 9 0 195 224 2217846 2217875 MAG: uncultured Armatimonadetes bacterium isolate MFD00905.bin.2.19 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
17897450 17897450 PRJEB30004_P_NODE_508095_length_189_cov_1.760000_g492468_i0 PRJEB30004 508095 189 1.76 3.3264 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 222 1.17e-53   NTclustered gi|2874253701|emb|OY969427.1| 157466 g492468 i0 89.011 275.931216931217 182 16 95 4 10 189 3408694 3408515 MAG: uncultured Armatimonadetes bacterium isolate MFD09671.bin.1.19 genome assembly, chromosome: 1 blastn 52151 222 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
19163914 19163914 PRJEB30004_P_NODE_354076_length_249_cov_1.733333_g338449_i0 PRJEB30004 354076 249 1.733333 4.31599917 Capsulimonas corticalis 2219043 Bacteria Bacteria 331 2.58e-86   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g338449 i0 93.304 510.682730923695 224 15 90 0 26 249 594865 594642 Capsulimonas corticalis AX-7 DNA, complete genome blastn 127160 331 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;