RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJEB29441" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB29441 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6091281 6091281 PRJEB29441_P_NODE_12225_length_318_cov_3.977695_g11784_i0 PRJEB29441 12225 318 3.977695 12.6490701 Mucor 4830 Fungi Fungi 588 1.84e-163   NTclustered gi|37786673|gb|AY213712.1| 4841 g11784 i0 100 99.8647798742138 318 0 100 0 1 318 700 383 Mucor racemosus strain UWFP 788 28S ribosomal RNA gene, partial sequence blastn 31757 588 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
6404694 6404694 PRJEB29441_P_NODE_26266_length_205_cov_1.307692_g25825_i0 PRJEB29441 26266 205 1.307692 2.6807686 Cokeromyces recurvatus 90255 Fungi Fungi 145 2.8699999999999997e-30   NTclustered gi|2324061888|ref|XM_051531209.1| 90255 g25825 i0 84.106 70.4 151 22 73 2 1 150 511 660 Cokeromyces recurvatus 60S ribosomal protein L2 (BX663DRAFT_550341), partial mRNA blastn 14432 145 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Cokeromyces Cokeromyces recurvatus
7678880 7678880 PRJEB29441_P_NODE_35167_length_176_cov_1.606299_g34726_i0 PRJEB29441 35167 176 1.606299 2.82708624 Mycotypha africana 64632 Fungi Fungi 126 8.63e-25   NTclustered gi|2432561609|ref|XM_053077210.1| 64632 g34726 i0 80.233 30.9659090909091 172 30 97 4 5 174 377 208 Mycotypha africana 40S ribosomal protein S16 (BDF20DRAFT_816965), partial mRNA blastn 5450 126 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mycotyphaceae Mycotypha Mycotypha africana
8641343 8641343 PRJEB29441_P_NODE_16227_length_269_cov_1.913636_g15786_i0 PRJEB29441 16227 269 1.913636 5.14768084 Fungi 4751 Fungi Fungi 497 2.63e-136   NTclustered gi|358001175|gb|JN938898.1| 4841 g15786 i0 100 99.7063197026022 269 0 100 0 1 269 276 8 Mucor racemosus strain DAOM 229663 28S ribosomal RNA (LSU) gene, partial sequence blastn 26821 497 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
11504756 11504756 PRJEB29441_P_NODE_36530_length_172_cov_2.439024_g36089_i0 PRJEB29441 36530 172 2.439024 4.19512128 Mucor velutinosus 708070 Fungi Fungi 119 1.4000000000000002e-22   NTclustered gi|2724936175|ref|XM_064825295.1| 708070 g36089 i0 79.651 70.8662790697674 172 30 99 3 1 171 702 535 Mucor velutinosus uncharacterized protein (ATC70_006013), partial mRNA blastn 12189 119 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor velutinosus
13741778 13741778 PRJEB29441_P_NODE_34931_length_177_cov_1.062500_g34490_i0 PRJEB29441 34931 177 1.0625 1.880625 Eukaryota 2759 Fungi Fungi 150 5.149999999999999e-32   NTclustered gi|2323715713|ref|XM_051567416.1| 64574 g34490 i0 83.851 20.7062146892655 161 23 90 3 19 177 360 201 Radiomyces spectabilis 40S ribosomal protein S23 (BYT42DRAFT_561967), mRNA blastn 3665 150 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Radiomycetaceae Radiomyces Radiomyces spectabilis
16603161 16603161 PRJEB29441_P_NODE_18474_length_249_cov_4.090000_g18033_i0 PRJEB29441 18474 249 4.09 10.1841 Mucor racemosus 4841 Fungi Fungi 460 3.16e-125   NTclustered gi|225134681|gb|FJ345353.1| 4841 g18033 i0 100 46.281124497992 249 0 100 0 1 249 3997 3749 Mucor racemosus strain ATCC 42647 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11524 460 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
17878292 17878292 PRJEB29441_P_NODE_36695_length_172_cov_1.577236_g36254_i0 PRJEB29441 36695 172 1.577236 2.71284592 Gongronella sp. w5 483437 Fungi Fungi 307 2.79e-79   NTclustered gi|2301278552|ref|NC_066217.1| 483437 g36254 i0 98.837 48.2441860465116 172 2 100 0 1 172 684 513 Gongronella sp. w5 culture CCTCC:AF 2012004 mitochondrion, complete genome blastn 8298 307 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Cunninghamellaceae Gongronella Gongronella sp. w5
21390306 21390306 PRJEB29441_P_NODE_10197_length_354_cov_1.632787_g9756_i0 PRJEB29441 10197 354 1.632787 5.78006598 Mucor 4830 Fungi Fungi 643 4.3399999999999985e-180   NTclustered gi|168378|gb|M26190.1|MRARRHA 4841 g9756 i0 99.435 101.550847457627 354 2 100 0 1 354 1796 2149 M.racemosus (Zygomycetes) 25S ribosomal RNA gene blastn 35949 643 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
21703312 21703312 PRJEB29441_P_NODE_31478_length_186_cov_6.029197_g31037_i0 PRJEB29441 31478 186 6.029197 11.21430642 Mucor racemosus 4841 Fungi Fungi 316 5.11e-82   NTclustered gi|225134681|gb|FJ345353.1| 4841 g31037 i0 97.826 11.2365591397849 184 2 99 2 1 184 2169 2350 Mucor racemosus strain ATCC 42647 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2090 316 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
23940551 23940551 PRJEB29441_P_NODE_19839_length_239_cov_3.178947_g19398_i0 PRJEB29441 19839 239 3.178947 7.59768333 Fungi 4751 Fungi Fungi 431 2.3599999999999996e-116   NTclustered gi|908373098|gb|JF723682.2| 4841 g19398 i0 99.163 100 239 2 100 0 1 239 709 947 Mucor racemosus strain LMSA 1.09.217 18S ribosomal RNA gene, partial sequence blastn 23900 431 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;