RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB29441" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB29441 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7678602 7678602 PRJEB29441_P_NODE_19807_length_240_cov_0.931937_g19366_i0 PRJEB29441 19807 240 0.931937 2.2366488 Physarum polycephalum 5791 Evosea other_Eukaryota 296 9.03e-76   NTclustered gi|3221|emb|V01159.1| 5791 g19366 i0 95.652 6.3 184 8 77 0 57 240 2481 2298 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 1512 296 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
8953666 8953666 PRJEB29441_P_NODE_39008_length_167_cov_0.864407_g38567_i0 PRJEB29441 39008 167 0.864407 1.44355969 Schizoplasmodiopsis pseudoendospora 668367 Evosea other_Eukaryota 108 2.95e-19   NTclustered gi|260909289|gb|FJ766475.1| 668367 g38567 i0 84.071 0.676646706586826 113 16 66 2 57 167 216 328 Schizoplasmodiopsis pseudoendospora strain PBR-G5-1 culture-collection ATCC:PRA-195 clone 36 18S ribosomal RNA gene, partial sequence blastn 113 108 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis pseudoendospora
16603456 16603456 PRJEB29441_P_NODE_35174_length_176_cov_1.606299_g34733_i0 PRJEB29441 35174 176 1.606299 2.82708624 Schizoplasmodiopsis pseudoendospora 668367 Evosea other_Eukaryota 204 3.87e-48   NTclustered gi|260909289|gb|FJ766475.1| 668367 g34733 i0 87.5 2.75568181818182 176 22 100 0 1 176 1449 1624 Schizoplasmodiopsis pseudoendospora strain PBR-G5-1 culture-collection ATCC:PRA-195 clone 36 18S ribosomal RNA gene, partial sequence blastn 485 204 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis pseudoendospora
19152182 19152182 PRJEB29441_P_NODE_37816_length_169_cov_1.700000_g37375_i0 PRJEB29441 37816 169 1.7 2.873 Ceratiomyxella tahitiensis 661162 Evosea other_Eukaryota 307 2.73e-79   NTclustered gi|254679474|gb|FJ544419.1| 661162 g37375 i0 99.408 47.3668639053254 169 1 100 0 1 169 1525 1357 Ceratiomyxella tahitiensis isolate HI04-93-l-1 18S ribosomal RNA gene, partial sequence blastn 8005 307 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Schizoplasmodiidae Ceratiomyxella Ceratiomyxella tahitiensis
21703043 21703043 PRJEB29441_P_NODE_15798_length_273_cov_2.732143_g15357_i0 PRJEB29441 15798 273 2.732143 7.45875039 Planoprotostelium aurantium 65008 Evosea other_Eukaryota 505 1.6e-138   NTclustered gi|262262919|gb|FJ766462.1| 65008 g15357 i0 100 50.3443223443223 273 0 100 0 1 273 48 320 Planoprotostelium aurantium strain LEE06-2l-3-1 small subunit ribosomal RNA gene, partial sequence blastn 13744 505 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium aurantium
24252330 24252330 PRJEB29441_P_NODE_30200_length_190_cov_2.560284_g29759_i0 PRJEB29441 30200 190 2.560284 4.8645396 Planoprotostelium aurantium 65008 Evosea other_Eukaryota 348 1.86e-91   NTclustered gi|262262919|gb|FJ766462.1| 65008 g29759 i0 100 278.410526315789 188 0 99 0 1 188 1305 1492 Planoprotostelium aurantium strain LEE06-2l-3-1 small subunit ribosomal RNA gene, partial sequence blastn 52898 348 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium aurantium
24252683 24252683 PRJEB29441_P_NODE_9600_length_367_cov_2.352201_g9159_i0 PRJEB29441 9600 367 2.352201 8.63257767 Planoprotostelium aurantium 65008 Evosea other_Eukaryota 676 0   NTclustered gi|262262919|gb|FJ766462.1| 65008 g9159 i0 100 53.5476839237057 366 0 99 0 1 366 639 1004 Planoprotostelium aurantium strain LEE06-2l-3-1 small subunit ribosomal RNA gene, partial sequence blastn 19652 676 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium aurantium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;