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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJEB29441" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB29441 · 21 ✖

analysis 1

  • blastn · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26517 26517 PRJEB29441_P_NODE_31101_length_188_cov_1.100719_g30660_i0 PRJEB29441 31101 188 1.100719 2.06935172 Mus musculus 10090 Chordata Chordata 54.7 0.004   NTclustered gi|74013339|gb|AC153564.6| 10090 g30660 i0 96.97 0.351063829787234 33 0 17 1 3 34 21 53 Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence blastn 66 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
988401 988401 PRJEB29441_P_NODE_47041_length_161_cov_0.910714_g46600_i0 PRJEB29441 47041 161 0.910714 1.46624954 Artiodactyla 91561 Chordata Chordata 67.6 4.78e-7   NTclustered gi|2633875539|ref|XR_009737079.1| 9906 g46600 i0 97.436 12.1490683229814 39 1 24 0 1 39 154 116 PREDICTED: Bos javanicus uncharacterized LOC133249742 (LOC133249742), transcript variant X1, ncRNA blastn 1956 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
2576690 2576690 PRJEB29441_P_NODE_45923_length_162_cov_0.902655_g45482_i0 PRJEB29441 45923 162 0.902655 1.4623011 Sus scrofa 9823 Chordata Chordata 119 1.31e-22   NTclustered gi|1191882025|ref|XR_002344255.1| 9823 g45482 i0 86.916 12.716049382716 107 12 65 2 13 118 1478 1583 PREDICTED: Sus scrofa uncharacterized LOC110260796 (LOC110260796), ncRNA blastn 2060 119 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
7678789 7678789 PRJEB29441_P_NODE_29507_length_193_cov_1.062500_g29066_i0 PRJEB29441 29507 193 1.0625 2.050625 Polypterus senegalus 55291 Chordata Chordata 213 7.21e-51   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g29066 i0 89.474 10.1865284974093 171 15 88 3 1 169 1342 1173 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 1966 213 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
7678993 7678993 PRJEB29441_P_NODE_42707_length_164_cov_0.886957_g42266_i0 PRJEB29441 42707 164 0.886957 1.45460948 Pseudorca crassidens 82174 Chordata Chordata 132 1.71e-26   NTclustered gi|2791837331|ref|XR_010946971.1| 82174 g42266 i0 81.707 67.5 164 24 98 6 1 161 1847 2007 PREDICTED: Pseudorca crassidens uncharacterized lncRNA (LOC137232330), transcript variant X1, ncRNA blastn 11070 132 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Pseudorca Pseudorca crassidens
8641539 8641539 PRJEB29441_P_NODE_39287_length_167_cov_0.864407_g38846_i0 PRJEB29441 39287 167 0.864407 1.44355969 root 1 Root_unresolved Root_unresolved 309 7.53e-80   NTclustered gi|2587618203|ref|XR_009493738.1| 9913 g38846 i0 100 94.2455089820359 167 0 100 0 1 167 3486 3652 PREDICTED: Bos taurus uncharacterized lncRNA (LOC132344779), transcript variant X2, ncRNA blastn 15739 309 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
11504821 11504821 PRJEB29441_P_NODE_40250_length_166_cov_0.871795_g39809_i0 PRJEB29441 40250 166 0.871795 1.4471797 Meleagris gallopavo 9103 Chordata Chordata 220 3.6e-53   NTclustered gi|1776485916|ref|XR_004160754.1| 9103 g39809 i0 90.854 1.92168674698795 164 15 99 0 3 166 5852 5689 PREDICTED: Meleagris gallopavo uncharacterized LOC104912313 (LOC104912313), ncRNA blastn 319 220 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
11504872 11504872 PRJEB29441_P_NODE_44350_length_163_cov_0.894737_g43909_i0 PRJEB29441 44350 163 0.894737 1.45842131 Mus musculus 10090 Chordata Chordata 302 1.22e-77   NTclustered gi|51988080|gb|AC119842.9| 10090 g43909 i0 100 2 163 0 100 0 1 163 70624 70462 Mus musculus chromosome 1, clone RP23-277F23, complete sequence blastn 326 302 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13741855 13741855 PRJEB29441_P_NODE_45171_length_162_cov_1.424779_g44730_i0 PRJEB29441 45171 162 1.424779 2.30814198 Gallus 9030 Chordata Chordata 294 2.03e-75   NTclustered gi|2028522877|gb|MT800350.1| 9031 g44730 i0 99.383 100 162 1 100 0 1 162 2938 2777 Gallus gallus isolate 33917 mitochondrion, complete genome blastn 16200 294 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
15016225 15016225 PRJEB29441_P_NODE_45172_length_162_cov_1.424779_g44731_i0 PRJEB29441 45172 162 1.424779 2.30814198 Cheloniidae 8465 Chordata Chordata 54.7 0.004   NTclustered gi|2263258949|ref|XM_048845007.1| 8467 g44731 i0 100 0.895061728395062 29 0 18 0 115 143 8711 8739 PREDICTED: Caretta caretta caspase 8 associated protein 2 (CASP8AP2), transcript variant X2, mRNA blastn 145 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
15016230 15016230 PRJEB29441_P_NODE_45972_length_162_cov_0.902655_g45531_i0 PRJEB29441 45972 162 0.902655 1.4623011 Gallus 9030 Chordata Chordata 298 1.57e-76   NTclustered gi|2028522877|gb|MT800350.1| 9031 g45531 i0 100 99.3827160493827 161 0 99 0 2 162 3121 2961 Gallus gallus isolate 33917 mitochondrion, complete genome blastn 16100 298 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
16603595 16603595 PRJEB29441_P_NODE_44694_length_163_cov_0.894737_g44253_i0 PRJEB29441 44694 163 0.894737 1.45842131 Sus scrofa 9823 Chordata Chordata 302 1.22e-77   NTclustered gi|1191847866|ref|XM_021077378.1| 9823 g44253 i0 100 99.9877300613497 163 0 100 0 1 163 958 1120 PREDICTED: Sus scrofa centromere protein B (CENPB), mRNA blastn 16298 302 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
16603621 16603621 PRJEB29441_P_NODE_47034_length_161_cov_0.910714_g46593_i0 PRJEB29441 47034 161 0.910714 1.46624954 Bos taurus 9913 Chordata Chordata 298 1.56e-76   NTclustered gi|2587618204|ref|XR_009493739.1| 9913 g46593 i0 100 71.0931677018634 161 0 100 0 1 161 1260 1420 PREDICTED: Bos taurus uncharacterized lncRNA (LOC132344779), transcript variant X3, ncRNA blastn 11446 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
17566247 17566247 PRJEB29441_P_NODE_45774_length_162_cov_0.902655_g45333_i0 PRJEB29441 45774 162 0.902655 1.4623011 Phasianidae 9005 Chordata Chordata 294 2.03e-75   NTclustered gi|209364663|gb|AC202735.3| 9031 g45333 i0 99.383 9 162 1 100 0 1 162 78973 78812 Gallus gallus BAC clone CH261-123E19 from chromosome z, complete sequence blastn 1458 294 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
19152295 19152295 PRJEB29441_P_NODE_44596_length_163_cov_0.894737_g44155_i0 PRJEB29441 44596 163 0.894737 1.45842131 Mauremys mutica 74926 Chordata Chordata 158 2.8e-34   NTclustered gi|2129561913|ref|XM_045025083.1| 74926 g44155 i0 84.049 3.84049079754601 163 26 100 0 1 163 286 448 PREDICTED: Mauremys mutica ADP ribosylation factor like GTPase 8B (ARL8B), mRNA blastn 626 158 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys mutica
19152430 19152430 PRJEB29441_P_NODE_8996_length_380_cov_8.407855_g8555_i0 PRJEB29441 8996 380 8.407855 31.949849 Mus musculus 10090 Chordata Chordata 645 1.3099999999999995e-180   NTclustered gi|2904934826|gb|PQ737751.1| 10090 g8555 i0 99.162 100.110526315789 358 3 94 0 4 361 358 1 Mus musculus lncRNA161 lncRNA, complete sequence blastn 38042 645 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20114836 20114836 PRJEB29441_P_NODE_42876_length_164_cov_0.886957_g42435_i0 PRJEB29441 42876 164 0.886957 1.45460948 Bovidae 9895 Chordata Chordata 287 3.45e-73   NTclustered gi|256000864|gb|AC233562.7| 9913 g42435 i0 98.171 831.067073170732 164 3 100 0 1 164 68235 68398 Bos taurus Y Chr BAC CH240-231K19 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence blastn 136295 287 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
21703399 21703399 PRJEB29441_P_NODE_36078_length_174_cov_1.048000_g35637_i0 PRJEB29441 36078 174 1.048 1.82352 Lampetra fluviatilis 7748 Chordata Chordata 56.5 0.001   NTclustered gi|2815004333|emb|OZ078626.2| 7748 g35637 i0 100 0.804597701149425 30 0 17 0 34 63 2434517 2434546 Lampetra fluviatilis genome assembly, chromosome: 58 blastn 140 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
24252342 24252342 PRJEB29441_P_NODE_30980_length_188_cov_1.467626_g30539_i0 PRJEB29441 30980 188 1.467626 2.75913688 Mus musculus 10090 Chordata Chordata 52.8 0.016   NTclustered gi|72384609|gb|AC153789.11| 10090 g30539 i0 100 0.148936170212766 28 0 15 0 1 28 166521 166548 Mus musculus chromosome 8, clone RP23-466N7, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
24252394 24252394 PRJEB29441_P_NODE_33880_length_180_cov_0.793893_g33439_i0 PRJEB29441 33880 180 0.793893 1.4290074 Bos taurus 9913 Chordata Chordata 294 2.3e-75   NTclustered gi|27884899|gb|AC129959.6| 9913 g33439 i0 96.133 1292.96111111111 181 6 100 1 1 180 187552 187372 Bos taurus, clone RP42-518P7, complete sequence blastn 232733 294 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
24252425 24252425 PRJEB29441_P_NODE_35740_length_174_cov_3.816000_g35299_i0 PRJEB29441 35740 174 3.816 6.63984 Myxine glutinosa 7769 Chordata Chordata 76.8 8.69e-10   NTclustered gi|2797582605|ref|XR_010983157.1| 7769 g35299 i0 88.06 24.6091954022989 67 5 37 3 1 65 21 86 PREDICTED: Myxine glutinosa U2 spliceosomal RNA (LOC137420188), ncRNA blastn 4282 76.8 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;