RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1300310 1300310 PRJEB2925_P_NODE_11522_length_324_cov_1.913495_g10247_i0 PRJEB2925 11522 324 1.913495 6.1997238 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 206 2.21e-48   NTclustered gi|423291978|gb|JQ519434.1| 5778 g10247 i0 92.908 40.8611111111111 141 10 79 0 1 141 740 600 Vermamoeba vermiformis clone JG10.93_e2 actin gene, partial cds blastn 13239 206 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1300449 1300449 PRJEB2925_P_NODE_9482_length_383_cov_3.591954_g8212_i0 PRJEB2925 9482 383 3.591954 13.75718382 Tubulinea group 04 sp. CAL5 1215995 Tubulinea other_Eukaryota 702 0   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g8212 i0 99.739 14.3080939947781 383 1 100 0 1 383 577 195 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 5480 702 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
7365678 7365678 PRJEB2925_P_NODE_14066_length_274_cov_2.121339_g12788_i0 PRJEB2925 14066 274 2.121339 5.81246886 root 1 Root_unresolved Root_unresolved 418 2.15e-112   NTclustered gi|292559443|ref|NC_013986.1| 5778 g12788 i0 95.42 52.8357664233577 262 12 96 0 13 274 19574 19835 Hartmannella vermiformis mitochondrion, complete genome blastn 14477 418 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16290765 16290765 PRJEB2925_P_NODE_17273_length_213_cov_12.696629_g15995_i0 PRJEB2925 17273 213 12.696629 27.04381977 Vermamoeba 1260114 Tubulinea other_Eukaryota 394 2.7e-105   NTclustered gi|1345606837|gb|MG969829.1| 5778 g15995 i0 100 99.9953051643192 213 0 100 0 1 213 216 428 Vermamoeba vermiformis isolate Hart1f small subunit ribosomal RNA gene, partial sequence blastn 21299 394 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16602956 16602956 PRJEB2925_P_NODE_5574_length_565_cov_5.128302_g4522_i0 PRJEB2925 5574 565 5.128302 28.9749063 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 568 4.469999999999999e-157   NTclustered gi|300078496|gb|GU001158.1| 5778 g4522 i0 95.265 63.9769911504425 359 16 64 1 207 565 1139 1496 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 36147 568 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19151613 19151613 PRJEB2925_P_NODE_14056_length_274_cov_2.527197_g12778_i0 PRJEB2925 14056 274 2.527197 6.92451978 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 193 1.4200000000000001e-44   NTclustered gi|292559443|ref|NC_013986.1| 5778 g12778 i0 95.082 29.5948905109489 122 6 79 0 153 274 19264 19385 Hartmannella vermiformis mitochondrion, complete genome blastn 8109 193 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21702865 21702865 PRJEB2925_P_NODE_4438_length_655_cov_4.350000_g3496_i0 PRJEB2925 4438 655 4.35 28.4925 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 363 2.65e-95   NTclustered gi|511487963|gb|JX898537.1| 1260765 g3496 i0 80.864 31.4595419847328 486 71 73 20 88 565 1 472 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 20606 363 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
25214191 25214191 PRJEB2925_P_NODE_7080_length_479_cov_43.927928_g5915_i0 PRJEB2925 7080 479 43.927928 210.41477512 Saccamoeba 136463 Tubulinea other_Eukaryota 885 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g5915 i0 100 94.5574112734864 479 0 100 0 1 479 1654 1176 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 45293 885 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;