RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2925 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10228800 10228800 PRJEB2925_P_NODE_10049_length_365_cov_1.496970_g8777_i0 PRJEB2925 10049 365 1.49697 5.4639405 Sphaerobacter thermophilus 2057 Bacteria Bacteria 156 2.57e-33   NTclustered gi|269785296|gb|CP001823.1| 479434 g8777 i0 91.892 22.4712328767123 111 9 30 0 191 301 122961 123071 Sphaerobacter thermophilus DSM 20745 chromosome 1, complete sequence blastn 8202 156 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
25214152 25214152 PRJEB2925_P_NODE_16160_length_246_cov_1.090047_g14882_i0 PRJEB2925 16160 246 1.090047 2.68151562 Sphaerobacter 2056 Bacteria Bacteria 137 5.96e-28   NTclustered gi|470485500|ref|NR_076704.1| 2057 g14882 i0 86.614 125.89837398374 127 14 51 3 103 228 176 300 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 30971 137 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;