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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 14 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1300348 1300348 PRJEB2925_P_NODE_15322_length_257_cov_2.103604_g14044_i0 PRJEB2925 15322 257 2.103604 5.40626228 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 141 4.85e-29   NTclustered gi|166035253|emb|CU349086.1| 100861 g14044 i0 89.908 28.1867704280156 109 11 42 0 5 113 223 115 Aphanomyces euteiches cDNA blastn 7244 141 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
2576058 2576058 PRJEB2925_P_NODE_9643_length_378_cov_2.825073_g8372_i0 PRJEB2925 9643 378 2.825073 10.67877594 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 342 1.9099999999999994e-89   NTclustered gi|325195057|emb|FR825852.1| 890382 g8372 i0 90.805 49.6587301587302 261 16 68 7 122 377 144 401 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 18771 342 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4815928 4815928 PRJEB2925_P_NODE_10044_length_365_cov_1.954545_g8772_i0 PRJEB2925 10044 365 1.954545 7.13408925 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 333 1.1e-86   NTclustered gi|698783790|ref|XM_009826637.1| 112090 g8772 i0 90.196 1.39452054794521 255 25 70 0 1 255 357 103 Aphanomyces astaci hypothetical protein mRNA blastn 509 333 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
7678345 7678345 PRJEB2925_P_NODE_15407_length_256_cov_1.615385_g14129_i0 PRJEB2925 15407 256 1.615385 4.1353856 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 412 9.27e-111   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g14129 i0 95.72 105.40234375 257 9 100 2 1 256 2555 2810 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 26983 412 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
7678361 7678361 PRJEB2925_P_NODE_1787_length_1308_cov_3.877455_g1323_i0 PRJEB2925 1787 1308 3.877455 50.7171114 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 60.2 8e-4   NTclustered gi|673039582|ref|XM_008875530.1| 157072 g1323 i0 85.246 0.0695718654434251 61 6 5 2 198 258 1098 1155 Aphanomyces invadans hypothetical protein mRNA blastn 91 60.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
15015977 15015977 PRJEB2925_P_NODE_7412_length_465_cov_22.153488_g6230_i0 PRJEB2925 7412 465 22.153488 103.0137192 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 848 0   NTclustered gi|338798188|gb|HQ665249.1| 82940 g6230 i0 99.57 99.9569892473118 465 2 100 0 1 465 322 786 Pythium middletonii isolate CBS 528.74 28S large subunit ribosomal RNA gene, partial sequence blastn 46480 848 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium middletonii
15328244 15328244 PRJEB2925_P_NODE_14893_length_263_cov_1.228070_g13615_i0 PRJEB2925 14893 263 1.22807 3.2298241 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 313 9.979999999999999e-81   NTclustered gi|698794321|ref|XM_009831888.1| 112090 g13615 i0 88.168 8.98859315589354 262 31 99 0 2 263 847 586 Aphanomyces astaci hypothetical protein mRNA blastn 2364 313 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16602997 16602997 PRJEB2925_P_NODE_9434_length_385_cov_1.448571_g8165_i0 PRJEB2925 9434 385 1.448571 5.57699835 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 322 2.54e-83   NTclustered gi|675210554|ref|XM_008915914.1| 761204 g8165 i0 82.011 95.3844155844156 378 68 98 0 5 382 778 1155 Phytophthora parasitica INRA-310 ATP-dependent RNA helicase eIF4A partial mRNA blastn 36723 322 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
21702789 21702789 PRJEB2925_P_NODE_11118_length_334_cov_1.675585_g9844_i0 PRJEB2925 11118 334 1.675585 5.5964539 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 237 8.1e-58   NTclustered gi|2795023784|ref|XM_067929914.1| 4785 g9844 i0 82.593 80.9251497005988 270 45 81 2 61 329 1129 1397 Phytophthora cinnamomi hsp70-like protein (IUM83_05758), partial mRNA blastn 27029 237 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21702876 21702876 PRJEB2925_P_NODE_5678_length_559_cov_3.127863_g4614_i0 PRJEB2925 5678 559 3.127863 17.48475417 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 946 0   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g4614 i0 97.985 101.713774597496 546 10 98 1 14 559 10176 9632 Pythium ultimum mitochondrion, complete genome blastn 56858 946 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
22978027 22978027 PRJEB2925_P_NODE_11419_length_326_cov_10.989691_g10144_i0 PRJEB2925 11419 326 10.989691 35.82639266 Aquastella attenuata 1495612 SAR_Eukaryotes SAR_Eukaryotes 492 1.5199999999999999e-134   NTclustered gi|629632980|gb|KF294792.1| 1495612 g10144 i0 93.958 101.263803680982 331 11 100 5 1 326 1263 1589 Aquastella attenuata isolate SL45 18S ribosomal RNA gene, partial sequence blastn 33012 492 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aquastella Aquastella attenuata
24251863 24251863 PRJEB2925_P_NODE_12160_length_309_cov_2.164234_g10884_i0 PRJEB2925 12160 309 2.164234 6.68748306 Phytophthora iranica 67592 SAR_Eukaryotes SAR_Eukaryotes 167 9.88e-37   NTclustered gi|1233049515|gb|KX250443.1| 67592 g10884 i0 77.143 51.2847896440129 315 54 99 14 1 306 658 353 Phytophthora iranica isolate 61J4(ex-type) heat shock protein 90 gene, partial cds blastn 15847 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora iranica
24251872 24251872 PRJEB2925_P_NODE_13160_length_289_cov_9.244094_g11883_i0 PRJEB2925 13160 289 9.244094 26.71543166 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 379 1.08e-100   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g11883 i0 91.941 74.5259515570934 273 18 94 4 1 271 1395 1665 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 21538 379 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
24251909 24251909 PRJEB2925_P_NODE_17420_length_204_cov_14.455621_g16142_i0 PRJEB2925 17420 204 14.455621 29.48946684 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 339 1.22e-88   NTclustered gi|256009645|gb|GQ374534.1| 112090 g16142 i0 96.569 96.8333333333333 204 7 100 0 1 204 190 393 Aphanomyces astaci strain Gb04 28S ribosomal RNA gene, partial sequence blastn 19754 339 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;