RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2925 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3852335 3852335 PRJEB2925_P_NODE_9524_length_382_cov_2.775216_g8254_i0 PRJEB2925 9524 382 2.775216 10.60132512 Rhabditoides inermis 96661 Nematoda Nematoda 172 2.68e-38   NTclustered gi|256709257|gb|GQ422281.1| 96661 g8254 i0 80.519 5.30628272251309 231 39 60 6 138 365 57 284 Rhabditoides inermis small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 2027 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
6404362 6404362 PRJEB2925_P_NODE_6646_length_502_cov_2.734475_g5501_i0 PRJEB2925 6646 502 2.734475 13.7270645 Caenorhabditis elegans 6239 Nematoda Nematoda 182 6e-41   NTclustered gi|1972261274|ref|NM_001384026.2| 6239 g5501 i0 80.591 17.0099601593625 237 44 47 2 212 447 138 373 Caenorhabditis elegans ATP synthase c subunit (Y82E9BR.3), mRNA blastn 8539 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;