RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10228847 10228847 PRJEB2925_P_NODE_13229_length_288_cov_2.173913_g11952_i0 PRJEB2925 13229 288 2.173913 6.26086944 Cavenderia medusoides 361117 Evosea other_Eukaryota 161 4.24e-35   NTclustered gi|169930320|gb|EU360785.1| 361117 g11952 i0 89.683 36.53125 126 13 44 0 2 127 230 105 Cavenderia medusoides isolate OH592 elongation factor 1 alpha gene, partial cds blastn 10521 161 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia medusoides
14054257 14054257 PRJEB2925_P_NODE_2552_length_966_cov_5.425349_g1912_i0 PRJEB2925 2552 966 5.425349 52.40887134 Dictyostelium discoideum 44689 Evosea other_Eukaryota 743 0   NTclustered gi|66813933|ref|XM_636054.1| 352472 g1912 i0 81.421 93.8819875776397 915 164 94 5 1 912 220 1131 Dictyostelium discoideum AX4 hypothetical protein (act7) mRNA, complete cds blastn 90690 743 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;