RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2925 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6404245 6404245 PRJEB2925_P_NODE_11106_length_334_cov_2.418060_g9832_i0 PRJEB2925 11106 334 2.41806 8.0763204 Polychytrium aggregatum 110093 Fungi Fungi 222 2.27e-53   NTclustered gi|2432137117|ref|XM_053113935.1| 110093 g9832 i0 82.129 38.8952095808383 263 43 78 4 47 307 293 33 Polychytrium aggregatum ribosomal protein L15e (BJ171DRAFT_579038), partial mRNA blastn 12991 222 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
6404313 6404313 PRJEB2925_P_NODE_16926_length_231_cov_2.234694_g15648_i0 PRJEB2925 16926 231 2.234694 5.16214314 Fimicolochytrium jonesii 1396493 Fungi Fungi 174 4.22e-39   NTclustered gi|2432072949|ref|XM_053073468.1| 1396493 g15648 i0 81.364 48.038961038961 220 35 94 5 1 217 395 611 Fimicolochytrium jonesii ubiquitin-related domain-containing protein (EV422DRAFT_586682), mRNA blastn 11097 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
7678423 7678423 PRJEB2925_P_NODE_9287_length_390_cov_1.535211_g8019_i0 PRJEB2925 9287 390 1.535211 5.9873229 Fimicolochytrium jonesii 1396493 Fungi Fungi 206 2.6999999999999998e-48   NTclustered gi|2432051426|ref|XM_053072055.1| 1396493 g8019 i0 77.005 18.8153846153846 374 76 95 10 22 390 659 291 Fimicolochytrium jonesii ribosomal family S4e-domain-containing protein (EV422DRAFT_563332), partial mRNA blastn 7338 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
16602848 16602848 PRJEB2925_P_NODE_11254_length_330_cov_6.593220_g9980_i0 PRJEB2925 11254 330 6.59322 21.757626 Fimicolochytrium jonesii 1396493 Fungi Fungi 128 5.02e-25   NTclustered gi|2432058563|ref|XM_053065718.1| 1396493 g9980 i0 79.558 2.50909090909091 181 35 55 2 44 223 259 80 Fimicolochytrium jonesii 40S ribosomal protein S28 (EV422DRAFT_248144), mRNA blastn 828 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;