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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2925 · 27 ✖

analysis 1

  • blastn · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26141 26141 PRJEB2925_P_NODE_9481_length_383_cov_3.807471_g8211_i0 PRJEB2925 9481 383 3.807471 14.58261393 Mus musculus 10090 Chordata Chordata 318 3.26e-82   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g8211 i0 84.337 8.38381201044386 332 44 86 8 16 344 58 384 Mus musculus lncRNA390 lncRNA, complete sequence blastn 3211 318 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1300322 1300322 PRJEB2925_P_NODE_1262_length_1896_cov_6.332617_g936_i1 PRJEB2925 1262 1896 6.332617 120.06641832 Bos taurus 9913 Chordata Chordata 2152 0   NTclustered gi|693|emb|V00115.1| 9913 g936 i1 99.245 47.4430379746835 1192 9 88 0 704 1895 1413 222 Bos taurus 1.711a satellite DNA with insert INS-1.711A. (extends from base 501 to 1151) blastn 89952 2152 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
1300341 1300341 PRJEB2925_P_NODE_1462_length_1592_cov_15.949261_g1077_i0 PRJEB2925 1462 1592 15.949261 253.91223512 Bos javanicus 9906 Chordata Chordata 2610 0   NTclustered gi|2633679277|ref|XR_009735251.1| 9906 g1077 i0 96.241 135.509422110553 1596 55 100 3 1 1592 1301 2895 PREDICTED: Bos javanicus uncharacterized LOC133244008 (LOC133244008), ncRNA blastn 215731 2610 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
1300433 1300433 PRJEB2925_P_NODE_7702_length_452_cov_3.357314_g6499_i0 PRJEB2925 7702 452 3.357314 15.17505928 Lampetra fluviatilis 7748 Chordata Chordata 52.8 0.044   NTclustered gi|2805736765|emb|OZ078441.1| 7748 g6499 i0 100 0.0619469026548673 28 0 6 0 168 195 3545871 3545844 Lampetra fluviatilis genome assembly, chromosome: 38 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
3538690 3538690 PRJEB2925_P_NODE_4503_length_649_cov_8.768730_g3553_i0 PRJEB2925 4503 649 8.76873 56.9090577 Chordata 7711 Chordata Chordata 326 3.44e-84   NTclustered gi|2851771758|ref|XM_069635237.1| 8296 g3553 i0 80.089 68.1587057010786 447 81 68 7 100 542 295 737 PREDICTED: Ambystoma mexicanum ribosomal protein S18 (RPS18), mRNA blastn 44235 326 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
3538709 3538709 PRJEB2925_P_NODE_8363_length_426_cov_2.304348_g7126_i0 PRJEB2925 8363 426 2.304348 9.81652248 Chordata 7711 Chordata Chordata 56.5 0.003   NTclustered gi|2805731953|emb|OZ078406.1| 7748 g7126 i0 100 0.971830985915493 30 0 7 0 233 262 1493136 1493107 Lampetra fluviatilis genome assembly, chromosome: 3 blastn 414 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
3852222 3852222 PRJEB2925_P_NODE_13944_length_276_cov_1.423237_g12666_i0 PRJEB2925 13944 276 1.423237 3.92813412 Xenopus tropicalis 8364 Chordata Chordata 494 3.51e-135   NTclustered gi|119709865|gb|AC149897.2| 8364 g12666 i0 98.913 176.989130434783 276 3 100 0 1 276 54962 55237 Xenopus tropicalis clone ISB-308M24, complete sequence blastn 48849 494 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
5128445 5128445 PRJEB2925_P_NODE_13325_length_286_cov_2.123506_g12048_i0 PRJEB2925 13325 286 2.123506 6.07322716 Rattus norvegicus 10116 Chordata Chordata 244 4.06e-60   NTclustered gi|23268692|gb|AF540887.1| 10116 g12048 i0 97.222 334.643356643357 144 4 99 0 142 285 895 1038 Rattus norvegicus DMBT1 4.7 kb transcript variant mRNA, complete cds blastn 95708 244 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
6404316 6404316 PRJEB2925_P_NODE_17526_length_196_cov_149.105590_g16248_i0 PRJEB2925 17526 196 149.10559 292.2469564 Hyperolius riggenbachi 752182 Chordata Chordata 217 5.679999999999999e-52   NTclustered gi|2801455573|ref|XM_068244652.1| 752182 g16248 i0 86.735 1 196 24 99 2 1 194 1255 1450 PREDICTED: Hyperolius riggenbachi methyltransferase 22, Kin17 lysine (METTL22), transcript variant X2, mRNA blastn 196 217 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
8953039 8953039 PRJEB2925_P_NODE_10108_length_363_cov_1.935976_g8836_i0 PRJEB2925 10108 363 1.935976 7.02759288 Rattus norvegicus 10116 Chordata Chordata 671 0   NTclustered gi|2775691896|ref|NM_001431745.1| 10116 g8836 i0 100 14.2093663911846 363 0 100 0 1 363 116 478 Rattus norvegicus lipocalin 4 like 2 (Lcn4l2), transcript variant 2, mRNA blastn 5158 671 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
8953151 8953151 PRJEB2925_P_NODE_6768_length_496_cov_2.841649_g5615_i0 PRJEB2925 6768 496 2.841649 14.09457904 Bos taurus 9913 Chordata Chordata 699 0   NTclustered gi|2587618257|ref|XR_009493754.1| 9913 g5615 i0 99.481 46.5665322580645 385 1 100 1 112 496 121 504 PREDICTED: Bos taurus uncharacterized lncRNA (LOC132344790), transcript variant X2, ncRNA blastn 23097 699 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
10228881 10228881 PRJEB2925_P_NODE_1689_length_1370_cov_2.201498_g1249_i0 PRJEB2925 1689 1370 2.201498 30.1605226 Bos taurus 9913 Chordata Chordata 2338 0   NTclustered gi|2587618257|ref|XR_009493754.1| 9913 g1249 i0 96.931 38.7430656934307 1401 11 100 4 1 1370 7025 5626 PREDICTED: Bos taurus uncharacterized lncRNA (LOC132344790), transcript variant X2, ncRNA blastn 53078 2338 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
11504136 11504136 PRJEB2925_P_NODE_13150_length_290_cov_1.396078_g11873_i0 PRJEB2925 13150 290 1.396078 4.0486262 Mus musculus 10090 Chordata Chordata 185 2.5399999999999998e-42   NTclustered gi|755497338|ref|XM_006497873.2| 10090 g11873 i0 100 7.13448275862069 100 0 65 0 191 290 303 204 PREDICTED: Mus musculus odorant binding protein 2A (Obp2a), transcript variant X3, mRNA blastn 2069 185 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
11504180 11504180 PRJEB2925_P_NODE_3010_length_856_cov_2.142509_g2285_i0 PRJEB2925 3010 856 2.142509 18.33987704 Bos taurus 9913 Chordata Chordata 1079 0   NTclustered gi|2587618203|ref|XR_009493738.1| 9913 g2285 i0 100 130.711448598131 584 0 99 0 272 855 8045 8628 PREDICTED: Bos taurus uncharacterized lncRNA (LOC132344779), transcript variant X2, ncRNA blastn 111889 1079 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
11504185 11504185 PRJEB2925_P_NODE_3590_length_752_cov_10.433752_g2763_i0 PRJEB2925 3590 752 10.433752 78.46181504 Rattus norvegicus 10116 Chordata Chordata 1345 0   NTclustered gi|2678927550|ref|XM_063283187.1| 10116 g2763 i0 99.33 29.3284574468085 746 0 99 1 7 752 1686 946 PREDICTED: Rattus norvegicus odorant binding protein 2B (Obp2b), transcript variant X6, mRNA blastn 22055 1345 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
16602903 16602903 PRJEB2925_P_NODE_15914_length_249_cov_1.724299_g14636_i0 PRJEB2925 15914 249 1.724299 4.29350451 Bos taurus 9913 Chordata Chordata 455 1.47e-123   NTclustered gi|2587618042|ref|XR_009493711.1| 9913 g14636 i0 99.598 99.0923694779116 249 1 100 0 1 249 265 513 PREDICTED: Bos taurus uncharacterized lncRNA (LOC132344761), ncRNA blastn 24674 455 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
16602913 16602913 PRJEB2925_P_NODE_17354_length_208_cov_143.450867_g16076_i0 PRJEB2925 17354 208 143.450867 298.37780336 Hyperolius riggenbachi 752182 Chordata Chordata 220 4.72e-53   NTclustered gi|2801455573|ref|XM_068244652.1| 752182 g16076 i0 85.99 0.995192307692308 207 27 99 2 2 206 1244 1450 PREDICTED: Hyperolius riggenbachi methyltransferase 22, Kin17 lysine (METTL22), transcript variant X2, mRNA blastn 207 220 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
16602967 16602967 PRJEB2925_P_NODE_6514_length_509_cov_3.588608_g5380_i0 PRJEB2925 6514 509 3.588608 18.26601472 Sorex fumeus 62283 Chordata Chordata 270 1.26e-67   NTclustered gi|2506778439|ref|XM_056138892.1| 62283 g5380 i0 79.345 71.2829076620825 397 72 77 9 68 459 92 483 PREDICTED: Sorex fumeus ribosomal protein S15a (RPS15A), mRNA blastn 36283 270 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex fumeus
17565944 17565944 PRJEB2925_P_NODE_15594_length_253_cov_2.311927_g14316_i0 PRJEB2925 15594 253 2.311927 5.84917531 Mammalia 40674 Chordata Chordata 143 1.32e-29   NTclustered gi|1934644986|ref|XM_037824123.1| 27675 g14316 i0 81.215 59.7865612648221 181 30 71 4 14 192 2424 2602 PREDICTED: Choloepus didactylus eukaryotic translation elongation factor 2 (EEF2), mRNA blastn 15126 143 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus
20426771 20426771 PRJEB2925_P_NODE_1257_length_1900_cov_6.277212_g936_i0 PRJEB2925 1257 1900 6.277212 119.267028 Bos taurus 9913 Chordata Chordata 2104 0   NTclustered gi|693|emb|V00115.1| 9913 g936 i0 98.329 42.1973684210526 1197 14 88 2 2 1197 222 1413 Bos taurus 1.711a satellite DNA with insert INS-1.711A. (extends from base 501 to 1151) blastn 80175 2104 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
21390234 21390234 PRJEB2925_P_NODE_13317_length_286_cov_2.936255_g12040_i0 PRJEB2925 13317 286 2.936255 8.3976893 Bovidae 9895 Chordata Chordata 466 7.97e-127   NTclustered gi|2878412464|ref|XM_070769344.1| 9915 g12040 i0 97.436 209.615384615385 273 7 95 0 3 275 294 22 PREDICTED: Bos indicus RIMS binding protein 2 (RIMBP2), transcript variant X3, mRNA blastn 59950 470 0.991489361702128 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus
21702825 21702825 PRJEB2925_P_NODE_15638_length_253_cov_1.055046_g14360_i0 PRJEB2925 15638 253 1.055046 2.66926638 Sus scrofa 9823 Chordata Chordata 291 4.4699999999999996e-74   NTclustered gi|121410603|emb|CT737281.12| 9823 g14360 i0 87.402 47.1541501976285 254 31 100 1 1 253 57989 57736 Pig DNA sequence from clone CH242-102G9 on chromosome 7, complete sequence blastn 11930 291 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
21702828 21702828 PRJEB2925_P_NODE_16058_length_247_cov_2.103774_g14780_i0 PRJEB2925 16058 247 2.103774 5.19632178 Marmota flaviventris 93162 Chordata Chordata 139 1.67e-28   NTclustered gi|2919376850|ref|XM_034636785.2| 93162 g14780 i0 91.919 91.6882591093117 99 8 40 0 137 235 630 728 PREDICTED: Marmota flaviventris ubiquitin C (Ubc), mRNA blastn 22647 139 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota flaviventris
21702874 21702874 PRJEB2925_P_NODE_5478_length_571_cov_3.436567_g4439_i0 PRJEB2925 5478 571 3.436567 19.62279757 Condylura cristata 143302 Chordata Chordata 300 1.82e-76   NTclustered gi|830229738|ref|XM_004694853.2| 143302 g4439 i0 83.974 76.2977232924694 312 50 55 0 223 534 1001 690 PREDICTED: Condylura cristata uncharacterized LOC101618719 (LOC101618719), mRNA blastn 43566 302 0.993377483443709 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Talpidae Condylura Condylura cristata
22978110 22978110 PRJEB2925_P_NODE_3839_length_723_cov_11.300872_g2968_i0 PRJEB2925 3839 723 11.300872 81.70530456 Rattus norvegicus 10116 Chordata Chordata 1325 0   NTclustered gi|2006397910|ref|NM_001128139.3| 10116 g2968 i0 100 26.8215767634855 717 0 99 0 7 723 1 717 Rattus norvegicus odorant binding protein 2A (Obp2a), mRNA blastn 19392 1325 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
22978132 22978132 PRJEB2925_P_NODE_5399_length_577_cov_2.588561_g4363_i0 PRJEB2925 5399 577 2.588561 14.93599697 Rattus norvegicus 10116 Chordata Chordata 1022 0   NTclustered gi|2736089698|ref|NM_001430809.1| 10116 g4363 i0 100 24.1871750433276 553 0 96 0 1 553 20 572 Rattus norvegicus lipocalin 3 (Lcn3), mRNA blastn 13956 1022 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
23940467 23940467 PRJEB2925_P_NODE_7559_length_458_cov_2.742317_g6368_i0 PRJEB2925 7559 458 2.742317 12.55981186 root 1 Root_unresolved Root_unresolved 52.8 0.044   NTclustered gi|2805737127|emb|OZ078444.1| 7748 g6368 i0 100 0.305676855895196 28 0 6 0 127 154 6732342 6732369 Lampetra fluviatilis genome assembly, chromosome: 41 blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;