RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2925 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5128467 5128467 PRJEB2925_P_NODE_15545_length_254_cov_1.232877_g14267_i0 PRJEB2925 15545 254 1.232877 3.13150758 Litorilinea aerophila 1204385 Bacteria Bacteria 327 3.42e-85   NTclustered gi|393193706|gb|JQ733906.1| 1204385 g14267 i0 90.119 117.803149606299 253 23 99 2 3 254 3725 3474 Litorilinea aerophila strain PRI-4131 small subunit ribosomal RNA, tRNA-Ile (trnI), and large subunit ribosomal RNA genes, complete sequence blastn 29922 327 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Litorilinea Litorilinea aerophila
16290748 16290748 PRJEB2925_P_NODE_15133_length_259_cov_4.223214_g13855_i0 PRJEB2925 15133 259 4.223214 10.93812426 Bacillati 1783272 Bacteria Bacteria 106 1.79e-18   NTclustered gi|470481958|ref|NR_076505.1| 357808 g13855 i0 86.735 183.803088803089 98 9 37 4 51 146 249 154 Roseiflexus sp. RS-1 strain RS-1 23S ribosomal RNA, complete sequence blastn 47605 106 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1
20426804 20426804 PRJEB2925_P_NODE_16337_length_243_cov_3.264423_g15059_i0 PRJEB2925 16337 243 3.264423 7.93254789 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 104 5.96e-18   NTclustered gi|2874254132|emb|OY970217.1| 1672391 g15059 i0 91.026 7.77366255144033 78 6 32 1 1 78 3523522 3523598 MAG: uncultured Chloroflexia bacterium isolate MFD05684.bin.1.130 genome assembly, chromosome: 1 blastn 1889 104 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
22978062 22978062 PRJEB2925_P_NODE_14139_length_273_cov_1.844538_g12861_i0 PRJEB2925 14139 273 1.844538 5.03558874 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 102 2.45e-17   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g12861 i0 84.259 1.66666666666667 108 13 39 4 1 107 1333838 1333734 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 455 102 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;