RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2925 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1300332 1300332 PRJEB2925_P_NODE_13562_length_282_cov_2.773279_g12284_i0 PRJEB2925 13562 282 2.773279 7.82064678 Blastocladiella sp. 2169676 Fungi Fungi 209 1.46e-49   NTclustered gi|1866582625|gb|MT730800.1| 2169676 g12284 i0 95.489 48.5 133 3 74 3 145 275 3951 3820 Blastocladiella sp. isolate JEL0735 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13677 209 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
10228967 10228967 PRJEB2925_P_NODE_9569_length_380_cov_18.301449_g8298_i0 PRJEB2925 9569 380 18.301449 69.5455062 Catenophlyctis variabilis 945688 Fungi Fungi 180 1.5899999999999999e-40   NTclustered gi|82398236|gb|DQ273780.1| 945688 g8298 i0 93.443 41.8578947368421 122 6 45 2 1 121 2545 2665 Catenophlyctis sp. JEL298 isolate AFTOL-ID 36 28S ribosomal RNA gene, partial sequence blastn 15906 180 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenophlyctis Catenophlyctis variabilis
24251984 24251984 PRJEB2925_P_NODE_9880_length_370_cov_5.462687_g8608_i0 PRJEB2925 9880 370 5.462687 20.2119419 Blastocladiella emersonii 4808 Fungi Fungi 407 6.52e-109   NTclustered gi|2440036|emb|X90411.1| 4808 g8608 i0 88.184 75.8513513513514 347 33 92 7 1 341 2210 1866 B.emersonii DNA for 28S ribosomal RNA gene blastn 28065 407 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;