RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB2925" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB2925 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1300357 1300357 PRJEB2925_P_NODE_15782_length_251_cov_1.064815_g14504_i0 PRJEB2925 15782 251 1.064815 2.67268565 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 326 1.21e-84   NTclustered gi|124507039|ref|XM_001352081.1| 36329 g14504 i0 100 2.02390438247012 176 0 70 0 76 251 1137 962 Plasmodium falciparum 3D7 conserved Plasmodium protein, unknown function (PF3D7_0924600), partial mRNA blastn 508 326 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
5128448 5128448 PRJEB2925_P_NODE_1365_length_1738_cov_6.762184_g1008_i0 PRJEB2925 1365 1738 6.762184 117.52675792 Babesia ovata 189622 SAR_Eukaryotes SAR_Eukaryotes 3070 0   NTclustered gi|1624698158|ref|XM_029013947.1| 189622 g1008 i0 98.561 1206.01898734177 1737 25 99 0 1 1737 1894 158 Babesia ovata endonuclease-reverse transcriptase (BOVATA_050300), partial mRNA blastn 2096061 3070 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovata
11504230 11504230 PRJEB2925_P_NODE_8010_length_440_cov_2.958025_g6790_i0 PRJEB2925 8010 440 2.958025 13.01531 Babesia duncani 323732 SAR_Eukaryotes SAR_Eukaryotes 91.6 9.01e-14   NTclustered gi|1474771164|gb|MH107388.1| 323732 g6790 i0 84.536 0.536363636363636 97 9 21 6 233 326 15781 15874 Babesia duncani isolate WA-1 apicoplast, complete genome blastn 236 91.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia duncani
16602904 16602904 PRJEB2925_P_NODE_16014_length_248_cov_1.079812_g14736_i0 PRJEB2925 16014 248 1.079812 2.67793376 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 307 4.34e-79   NTclustered gi|124512965|ref|XM_001349803.1| 36329 g14736 i0 98.837 2.41532258064516 172 2 69 0 1 172 815 644 Plasmodium falciparum 3D7 meiosis-specific nuclear structural protein 1, putative (PF3D7_1311100), partial mRNA blastn 599 307 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
24251888 24251888 PRJEB2925_P_NODE_15120_length_260_cov_1.022222_g13842_i0 PRJEB2925 15120 260 1.022222 2.6577772 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 405 1.58e-108   NTclustered gi|124513881|ref|XM_001350261.1| 36329 g13842 i0 100 1.68076923076923 219 0 84 0 42 260 1085 867 Plasmodium falciparum 3D7 zinc finger protein, putative (PF3D7_1358600), partial mRNA blastn 437 405 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
25214151 25214151 PRJEB2925_P_NODE_16020_length_248_cov_0.981221_g14742_i0 PRJEB2925 16020 248 0.981221 2.43342808 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 165 2.76e-36   NTclustered gi|160646|gb|M14599.1|PFARGSS 5821 g14742 i0 100 38.3145161290323 89 0 60 0 160 248 1730 1642 P.berghei small subunit rRNA gene blastn 9502 165 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;