RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB28589" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJEB28589 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5128339 5128339 PRJEB28589_S_NODE_15245_length_185_cov_1.673913_g15137_i0 PRJEB28589 15245 185 1.673913 3.09673905 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 52.8 0.016   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g15137 i0 94.118 0.183783783783784 34 2 18 0 17 50 1247404 1247371 Leptotrichia sp. SK-5 DNA, complete genome blastn 34 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
5128378 5128378 PRJEB28589_S_NODE_4845_length_328_cov_5.569395_g4737_i0 PRJEB28589 4845 328 5.569395 18.2676156 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 601 2.4399999999999998e-167   NTclustered gi|1276709865|gb|CP024700.1| 2663009 g4737 i0 99.695 100.518292682927 328 1 100 0 1 328 154465 154792 Fusobacterium pseudoperiodonticum strain KCOM 1263 chromosome, complete genome blastn 32970 601 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
7678274 7678274 PRJEB28589_S_NODE_9507_length_255_cov_2.120192_g9399_i0 PRJEB28589 9507 255 2.120192 5.4064896 Leptotrichia wadei 157687 Bacteria Bacteria 466 6.98e-127   NTclustered gi|1791353085|dbj|AP019829.2| 157687 g9399 i0 99.608 16.7686274509804 255 1 100 0 1 255 2266267 2266521 Leptotrichia wadei JCM16777 DNA, complete genome blastn 4276 466 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
15328123 15328123 PRJEB28589_S_NODE_2393_length_391_cov_16.127907_g2285_i0 PRJEB28589 2393 391 16.127907 63.06011637 Leptotrichia wadei 157687 Bacteria Bacteria 701 0   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g2285 i0 98.977 164.785166240409 391 4 100 0 1 391 2299269 2298879 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 64431 701 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
16602775 16602775 PRJEB28589_S_NODE_1994_length_413_cov_5.448087_g1886_i0 PRJEB28589 1994 413 5.448087 22.50059931 Fusobacterium animalis 76859 Bacteria Bacteria 763 0   NTclustered gi|2078821355|gb|CP071097.1| 76859 g1886 i0 100 99.6004842615012 413 0 100 0 1 413 1102236 1102648 Fusobacterium animalis strain THCT7A2 chromosome, complete genome blastn 41135 763 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
16602802 16602802 PRJEB28589_S_NODE_5434_length_317_cov_4.229630_g5326_i0 PRJEB28589 5434 317 4.22963 13.4079271 Leptotrichia wadei 157687 Bacteria Bacteria 553 6.679999999999998e-153   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g5326 i0 98.107 5.90851735015773 317 6 100 0 1 317 438770 438454 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 1873 553 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
19151550 19151550 PRJEB28589_S_NODE_7756_length_281_cov_3.777778_g7648_i0 PRJEB28589 7756 281 3.777778 10.61555618 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 486 5.989999999999999e-133   NTclustered gi|922689899|gb|CP012410.1| 712357 g7648 i0 97.865 116.839857651246 281 6 100 0 1 281 51726 52006 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 32832 486 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
20426646 20426646 PRJEB28589_S_NODE_1717_length_434_cov_10.043928_g1609_i0 PRJEB28589 1717 434 10.043928 43.59064752 Leptotrichia shahii 157691 Bacteria Bacteria 763 0   NTclustered gi|1708568515|dbj|AP019827.1| 157691 g1609 i0 98.387 148.859447004608 434 7 100 0 1 434 94610 94177 Leptotrichia shahii JCM16776 DNA, complete genome blastn 64605 763 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia shahii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;