RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB28589" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJEB28589 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25948 25948 PRJEB28589_S_NODE_4881_length_327_cov_6.667857_g4773_i0 PRJEB28589 4881 327 6.667857 21.80389239 Trebouxia sp. SL0000003 3350044 Plants Plants 244 4.73e-60   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g4773 i0 86.547 0.681957186544342 223 28 68 2 16 237 1626958 1626737 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 223 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
1300255 1300255 PRJEB28589_S_NODE_4882_length_327_cov_6.650000_g4774_i0 PRJEB28589 4882 327 6.65 21.7455 Trebouxia sp. SL0000003 3350044 Plants Plants 283 1e-71   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g4774 i0 84.641 0.935779816513762 306 23 90 14 31 324 760159 760452 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 306 283 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
2575860 2575860 PRJEB28589_S_NODE_5043_length_324_cov_4.584838_g4935_i0 PRJEB28589 5043 324 4.584838 14.85487512 Trebouxia sp. SL0000003 3350044 Plants Plants 196 1.33e-45   NTclustered gi|2917929690|emb|OZ234918.1| 3350044 g4935 i0 95.161 0.731481481481482 124 6 73 0 198 321 840891 840768 Trebouxia sp. SL0000003 genome assembly, chromosome: 13 blastn 237 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;