RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB28062" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB28062 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5127564 5127564 PRJEB28062_P_NODE_61965_length_443_cov_13.135135_g59605_i0 PRJEB28062 61965 443 13.135135 58.18864805 Thermanaerovibrio acidaminovorans 81462 Bacteria Bacteria 701 0   NTclustered gi|269099254|gb|CP001818.1| 525903 g59605 i0 98.492 0.898419864559819 398 5 90 1 26 422 1549186 1548789 Thermanaerovibrio acidaminovorans DSM 6589, complete genome blastn 398 701 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans
10228438 10228438 PRJEB28062_P_NODE_87709_length_352_cov_7.193548_g85347_i0 PRJEB28062 87709 352 7.193548 25.32128896 Thermanaerovibrio acidaminovorans 81462 Bacteria Bacteria 588 2.05e-163   NTclustered gi|269099254|gb|CP001818.1| 525903 g85347 i0 98.792 10.3892045454545 331 3 94 1 14 343 233124 233454 Thermanaerovibrio acidaminovorans DSM 6589, complete genome blastn 3657 588 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans
12777797 12777797 PRJEB28062_P_NODE_18051_length_889_cov_3.942402_g16072_i0 PRJEB28062 18051 889 3.942402 35.04795378 Fretibacterium fastidiosum 651822 Bacteria Bacteria 854 0   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g16072 i0 97.228 1.11361079865017 505 13 57 1 368 871 2002930 2003434 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 990 854 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;