contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJEB28062" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2573658 | 2573658 | PRJEB28062_P_NODE_115383_length_272_cov_1.688442_g113020_i0 | PRJEB28062 | 115383 | 272 | 1.688442 | 4.59256224 | Treponema sp. OMZ 803 | 120682 | Bacteria | Bacteria | 488 | 1.6099999999999996e-133 | NTclustered | gi|2265127813|gb|CP051195.1| | 120682 | g113020 | i0 | 99.259 | 15.0919117647059 | 270 | 2 | 99 | 0 | 1 | 270 | 1107462 | 1107193 | Treponema sp. OMZ 803 strain BF2M chromosome, complete genome | blastn | 4105 | 488 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 803 | ||
| 8952156 | 8952156 | PRJEB28062_P_NODE_60428_length_450_cov_7.286472_g58068_i0 | PRJEB28062 | 60428 | 450 | 7.286472 | 32.789124 | Treponema medium | 58231 | Bacteria | Bacteria | 174 | 8.92e-39 | NTclustered | gi|1996296230|gb|CP031393.1| | 58231 | g58068 | i0 | 83.163 | 2.60888888888889 | 196 | 28 | 43 | 4 | 34 | 227 | 877449 | 877257 | Treponema medium strain ATCC 700293 chromosome, complete genome | blastn | 1174 | 174 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 10227837 | 10227837 | PRJEB28062_P_NODE_56929_length_466_cov_15.613232_g54575_i0 | PRJEB28062 | 56929 | 466 | 15.613232 | 72.75766112 | Treponema vincentii | 69710 | Bacteria | Bacteria | 444 | 6.39e-120 | NTclustered | gi|2265113193|gb|CP051148.1| | 69710 | g54575 | i0 | 85.446 | 6.33047210300429 | 426 | 62 | 91 | 0 | 23 | 448 | 897367 | 896942 | Treponema vincentii strain OMZ 861 chromosome, complete genome | blastn | 2950 | 444 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 11502072 | 11502072 | PRJEB28062_P_NODE_133130_length_232_cov_5.371069_g130766_i0 | PRJEB28062 | 133130 | 232 | 5.371069 | 12.46088008 | Treponema denticola | 158 | Bacteria | Bacteria | 233 | 6.899999999999999e-57 | NTclustered | gi|2277007739|gb|CP038800.1| | 158 | g130766 | i0 | 86.854 | 147.560344827586 | 213 | 23 | 91 | 5 | 1 | 211 | 1101327 | 1101118 | Treponema denticola strain ATCC 700768 chromosome, complete genome | blastn | 34234 | 233 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 12777779 | 12777779 | PRJEB28062_P_NODE_17371_length_908_cov_13.196407_g15419_i0 | PRJEB28062 | 17371 | 908 | 13.196407 | 119.82337556 | Treponema vincentii | 69710 | Bacteria | Bacteria | 1580 | 0 | NTclustered | gi|1807378492|gb|CP048020.1| | 69710 | g15419 | i0 | 99.427 | 13.374449339207 | 872 | 2 | 96 | 3 | 19 | 889 | 592217 | 593086 | Treponema vincentii strain OMZ 804 chromosome, complete genome | blastn | 12144 | 1580 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 16289797 | 16289797 | PRJEB28062_P_NODE_136913_length_209_cov_4.948529_g134549_i0 | PRJEB28062 | 136913 | 209 | 4.948529 | 10.34242561 | Treponema | 157 | Bacteria | Bacteria | 200 | 6.18e-47 | NTclustered | gi|332179772|gb|CP002696.1| | 906968 | g134549 | i0 | 86.316 | 55.511961722488 | 190 | 19 | 89 | 7 | 1 | 186 | 430015 | 429829 | Treponema brennaborense DSM 12168, complete genome | blastn | 11602 | 200 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema brennaborense | ||
| 20425307 | 20425307 | PRJEB28062_P_NODE_35557_length_614_cov_114.334566_g33236_i0 | PRJEB28062 | 35557 | 614 | 114.334566 | 702.01423524 | Treponema vincentii | 69710 | Bacteria | Bacteria | 787 | 0 | NTclustered | gi|2265115921|gb|CP051153.1| | 69710 | g33236 | i0 | 92.559 | 4.48208469055375 | 551 | 38 | 90 | 2 | 23 | 573 | 161601 | 161054 | Treponema vincentii strain OMZ 862 chromosome, complete genome | blastn | 2752 | 787 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 21702498 | 21702498 | PRJEB28062_P_NODE_91858_length_339_cov_4.473684_g89496_i0 | PRJEB28062 | 91858 | 339 | 4.473684 | 15.16578876 | Treponema sp. OMZ 305 | 1659192 | Bacteria | Bacteria | 512 | 1.22e-140 | NTclustered | gi|2265133351|gb|CP051300.1| | 1659192 | g89496 | i0 | 97.039 | 4.43362831858407 | 304 | 9 | 90 | 0 | 13 | 316 | 304330 | 304027 | Treponema sp. OMZ 305 chromosome, complete genome | blastn | 1503 | 512 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 305 | ||
| 22977071 | 22977071 | PRJEB28062_P_NODE_55779_length_472_cov_6.817043_g53425_i0 | PRJEB28062 | 55779 | 472 | 6.817043 | 32.17644296 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 285 | 4.16e-72 | NTclustered | gi|2891482181|emb|OZ219914.1| | 2053615 | g53425 | i0 | 78.96 | 2.25635593220339 | 423 | 85 | 89 | 4 | 24 | 444 | 396400 | 395980 | MAG: Spirochaetia bacterium isolate 65460407-d738-4661-97af-02a88c6845d9 genome assembly, chromosome: 2 | blastn | 1065 | 285 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;