RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB28062" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB28062 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24042 24042 PRJEB28062_P_NODE_133301_length_232_cov_2.113208_g130937_i0 PRJEB28062 133301 232 2.113208 4.90264256 Polychytrium aggregatum 110093 Fungi Fungi 137 5.569999999999999e-28   NTclustered gi|2432156890|ref|XM_053107738.1| 110093 g130937 i0 84.459 8.26724137931035 148 13 60 5 39 178 602 747 Polychytrium aggregatum 60S ribosomal protein L2 (BJ171DRAFT_425809), partial mRNA blastn 1918 137 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
987923 987923 PRJEB28062_P_NODE_88781_length_349_cov_1.565217_g86419_i0 PRJEB28062 88781 349 1.565217 5.46260733 Fungi 4751 Fungi Fungi 503 7.57e-138   NTclustered gi|1866582755|gb|MT730930.1| 64517 g86419 i0 93.529 97.1174785100286 340 18 97 4 12 349 4027 4364 Rhizophlyctis rosea isolate KP18 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 33894 503 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
8951973 8951973 PRJEB28062_P_NODE_51668_length_494_cov_22.992874_g49317_i0 PRJEB28062 51668 494 22.992874 113.58479756 Spizellomyces punctatus 109760 Fungi Fungi 316 1.55e-81   NTclustered gi|1026947610|ref|XM_016748378.1| 645134 g49317 i0 81.114 21.9676113360324 413 63 82 14 70 473 686 280 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S8 (SPPG_00042), mRNA blastn 10852 316 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
20426310 20426310 PRJEB28062_P_NODE_84677_length_362_cov_2.394464_g82315_i0 PRJEB28062 84677 362 2.394464 8.66795968 Endochytrium sp. JEL 324 281852 Fungi Fungi 198 4.1699999999999996e-46   NTclustered gi|82398552|gb|DQ273816.1| 281852 g82315 i0 96.639 64.0303867403315 119 4 58 0 241 359 1959 2077 Endochytrium sp. JEL324 isolate AFTOL-ID 631 28S ribosomal RNA gene, partial sequence blastn 23179 198 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Endochytriaceae Endochytrium Endochytrium sp. JEL 324
22664829 22664829 PRJEB28062_P_NODE_92038_length_338_cov_117.811321_g89676_i0 PRJEB28062 92038 338 117.811321 398.20226498 Powellomycetaceae 1134080 Fungi Fungi 549 9.279999999999997e-152   NTclustered gi|1866582454|gb|MT730629.1| 109894 g89676 i0 98.095 92.792899408284 315 6 93 0 1 315 4538 4224 Geranomyces variabilis isolate Barr350 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31364 549 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;