RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJEB28062" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 13 ✖

tax_clade 1

bioproject 1

  • PRJEB28062 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2573867 2573867 PRJEB28062_P_NODE_127683_length_245_cov_3.860465_g125319_i0 PRJEB28062 127683 245 3.860465 9.45813925 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 220 5.73e-53   NTclustered gi|238617605|gb|FJ973380.1| 45107 g125319 i0 83.004 42.7959183673469 253 34 100 6 1 245 1622 1873 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 10485 220 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
3851283 3851283 PRJEB28062_P_NODE_59144_length_456_cov_3.553525_g56785_i0 PRJEB28062 59144 456 3.553525 16.204074 Cercomonas sp. HFCC540 458868 SAR_Eukaryotes SAR_Eukaryotes 399 1.3699999999999998e-106   NTclustered gi|161015708|gb|EF681942.1| 458868 g56785 i0 85.112 38.9254385964912 403 46 88 9 36 435 765 374 Cercomonas sp. HFCC540 28S ribosomal RNA gene, partial sequence blastn 17750 399 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. HFCC540
7676624 7676624 PRJEB28062_P_NODE_24747_length_748_cov_6.376296_g22530_i0 PRJEB28062 24747 748 6.376296 47.69469408 Phytocercomonas venanatans 2065209 SAR_Eukaryotes SAR_Eukaryotes 366 2.359999999999999e-96   NTclustered gi|1315527750|gb|MF034900.1| 2065209 g22530 i0 82.339 59.3917112299465 436 63 100 12 322 748 9756 9326 Phytocercomonas venanatans 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 44425 366 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Phytocercomonas Phytocercomonas venanatans
12777341 12777341 PRJEB28062_P_NODE_117251_length_267_cov_3.056701_g114888_i0 PRJEB28062 117251 267 3.056701 8.16139167 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 390 4.56e-104   NTclustered gi|88792583|gb|DQ386164.1| 372086 g114888 i0 94.902 93.7003745318352 255 3 96 1 1 255 1526 1282 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 25018 390 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
15015741 15015741 PRJEB28062_P_NODE_84592_length_362_cov_4.560554_g82230_i0 PRJEB28062 84592 362 4.560554 16.50920548 Thaumatomonas 45099 SAR_Eukaryotes SAR_Eukaryotes 134 1.19e-26   NTclustered gi|160688658|gb|EU138880.1| 352461 g82230 i0 81.111 31.5055248618785 180 23 64 9 24 202 2001 2170 Thaumatomonas coloniensis strain HFCC93 28S ribosomal RNA gene, partial sequence blastn 11405 135 0.992592592592593 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas coloniensis
15015858 15015858 PRJEB28062_P_NODE_97652_length_322_cov_1.819277_g95290_i0 PRJEB28062 97652 322 1.819277 5.85807194 Cercomonadida 188941 SAR_Eukaryotes SAR_Eukaryotes 211 4.710000000000001e-50   NTclustered gi|238617605|gb|FJ973380.1| 45107 g95290 i0 80.797 57.6335403726708 276 47 85 6 50 322 1317 1589 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 18558 213 0.990610328638498 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
16600597 16600597 PRJEB28062_P_NODE_117294_length_267_cov_2.360825_g114931_i0 PRJEB28062 117294 267 2.360825 6.30340275 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 219 2.2799999999999993e-52   NTclustered gi|238617605|gb|FJ973380.1| 45107 g114931 i0 82.09 57.3670411985019 268 36 97 12 1 258 1881 1616 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 15317 219 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
17875603 17875603 PRJEB28062_P_NODE_129255_length_243_cov_1.605882_g126891_i0 PRJEB28062 129255 243 1.605882 3.90229326 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 366 6.89e-97   NTclustered gi|238617605|gb|FJ973380.1| 45107 g126891 i0 93.827 98.7777777777778 243 15 100 0 1 243 1594 1352 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 24003 366 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
18838879 18838879 PRJEB28062_P_NODE_135955_length_217_cov_5.756944_g133591_i0 PRJEB28062 135955 217 5.756944 12.49256848 Cercomonas 45109 SAR_Eukaryotes SAR_Eukaryotes 287 4.829999999999999e-73   NTclustered gi|161015708|gb|EF681942.1| 458868 g133591 i0 94.18 73.3133640552995 189 9 86 1 31 217 1 189 Cercomonas sp. HFCC540 28S ribosomal RNA gene, partial sequence blastn 15909 287 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. HFCC540
20426438 20426438 PRJEB28062_P_NODE_90877_length_342_cov_5.312268_g88515_i0 PRJEB28062 90877 342 5.312268 18.16795656 Cryothecomonas sp. APCC MC5-1Cryo 741088 SAR_Eukaryotes SAR_Eukaryotes 394 4.66e-105   NTclustered gi|290760480|gb|GQ144683.1| 741088 g88515 i0 88.82 61.0584795321637 322 35 94 1 22 342 1924 2245 Cryothecomonas sp. APCC MC5-1Cryo large subunit ribosomal RNA gene, partial sequence blastn 20882 394 1 Eukaryota Sar   Cercozoa Thecofilosea Cryomonadida Protaspidae Cryothecomonas Cryothecomonas sp. APCC MC5-1Cryo
22977636 22977636 PRJEB28062_P_NODE_86179_length_357_cov_10.419014_g83817_i0 PRJEB28062 86179 357 10.419014 37.19587998 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 403 8.099999999999998e-108   NTclustered gi|88792583|gb|DQ386164.1| 372086 g83817 i0 88.988 35.0056022408964 336 23 93 7 4 336 2292 1968 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 12497 403 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
24249539 24249539 PRJEB28062_P_NODE_113980_length_276_cov_1.137931_g111617_i0 PRJEB28062 113980 276 1.137931 3.14068956 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 340 4.84e-89   NTclustered gi|238617605|gb|FJ973380.1| 45107 g111617 i0 89.416 43.7971014492754 274 23 98 5 1 270 1895 1624 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 12088 340 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
24251237 24251237 PRJEB28062_P_NODE_74000_length_397_cov_7.354938_g71638_i0 PRJEB28062 74000 397 7.354938 29.19910386 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 169 3.62e-37   NTclustered gi|238617605|gb|FJ973380.1| 45107 g71638 i0 82.979 33.7531486146096 188 30 47 2 38 224 1527 1713 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 13400 169 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;