RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB27957" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB27957 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3849588 3849588 PRJEB27957_P_NODE_41564_length_249_cov_1.300000_g41454_i0 PRJEB27957 41564 249 1.3 3.237 Candidatus Jettenia caeni 247490 Bacteria Bacteria 54.7 0.006   NTclustered gi|2556874801|gb|CP129467.1| 247490 g41454 i0 100 0.116465863453815 29 0 12 0 196 224 2781580 2781608 MAG: Candidatus Jettenia caeni isolate YC-1 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Jettenia Candidatus Jettenia caeni
8950434 8950434 PRJEB27957_P_NODE_26168_length_298_cov_1.164659_g26058_i0 PRJEB27957 26168 298 1.1646590000000001 3.47068382 Victivallaceae bacterium 2793042 Bacteria Bacteria 54.7 0.008   NTclustered gi|2621704067|emb|OY761536.1| 2793042 g26058 i0 94.286 0.11744966442953 35 2 12 0 22 56 1683378 1683412 MAG: Victivallaceae bacterium isolate e353ef71-700a-4510-b67c-5bed4426050c genome assembly, chromosome: 1 blastn 35 54.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
19148859 19148859 PRJEB27957_P_NODE_102316_length_169_cov_2.166667_g102206_i0 PRJEB27957 102316 169 2.166667 3.66166723 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 54.7 0.004   NTclustered gi|2874253811|emb|OY969795.1| 464461 g102206 i0 100 0.171597633136095 29 0 17 0 141 169 2192934 2192962 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
19148916 19148916 PRJEB27957_P_NODE_52716_length_227_cov_1.168539_g52606_i0 PRJEB27957 52716 227 1.168539 2.65258353 Tepidisphaeraceae bacterium 2876886 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874253799|emb|OY969783.1| 2876886 g52606 i0 100 0.127753303964758 29 0 13 0 33 61 4471859 4471887 MAG: Tepidisphaeraceae bacterium isolate MFD04580.bin.c.1 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae   Tepidisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;