RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB27957" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB27957 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1297663 1297663 PRJEB27957_P_NODE_57322_length_220_cov_1.099415_g57212_i0 PRJEB27957 57322 220 1.099415 2.418713 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.019   NTclustered gi|1160573150|ref|XM_020576753.1| 670386 g57212 i0 100 0.127272727272727 28 0 13 0 75 102 1158 1185 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
14051538 14051538 PRJEB27957_P_NODE_23712_length_309_cov_1.800000_g23602_i0 PRJEB27957 23712 309 1.8 5.562 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.029   NTclustered gi|66800266|ref|XM_629057.1| 352472 g23602 i0 100 0.0906148867313916 28 0 9 0 114 141 243 216 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0293628) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
24249248 24249248 PRJEB27957_P_NODE_63580_length_211_cov_1.283951_g63470_i0 PRJEB27957 63580 211 1.283951 2.70913661 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.019   NTclustered gi|1160562244|ref|XM_020579337.1| 670386 g63470 i0 100 0.132701421800948 28 0 13 0 128 155 2168 2141 Polysphondylium pallidum PN500 ribonucleotide reductase large subunit (rnrA), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;