RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB25789" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB25789 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5125523 5125523 PRJEB25789_S_NODE_14745_length_263_cov_1.215789_g14666_i0 PRJEB25789 14745 263 1.215789 3.19752507 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 244 3.69e-60   NTclustered gi|2794921736|ref|XM_067881102.1| 164328 g14666 i0 84.553 5.77186311787072 246 38 94 0 17 262 834 589 Phytophthora ramorum Succinate--CoA ligase [ADP-forming] subunit alpha (KRP23_10630), partial mRNA blastn 1518 244 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
14051370 14051370 PRJEB25789_S_NODE_20212_length_239_cov_7.234940_g20133_i0 PRJEB25789 20212 239 7.23494 17.2915066 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 231 2.5699999999999997e-56   NTclustered gi|301098381|ref|XM_002898238.1| 403677 g20133 i0 86.047 85.9874476987448 215 30 90 0 20 234 79 293 Phytophthora infestans T30-4 actin-like protein (PITG_15117), mRNA blastn 20551 231 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
25212754 25212754 PRJEB25789_S_NODE_20760_length_218_cov_5.489655_g20681_i0 PRJEB25789 20760 218 5.489655 11.9674479 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 244 2.96e-60   NTclustered gi|164508134|emb|AM412176.1| 4785 g20681 i0 87.037 99.0871559633027 216 28 99 0 1 216 477 262 Phytophthora cinnamomi act2 gene for actin, strain Pr120 blastn 21601 244 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;