RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB25583" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB25583 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5125379 5125379 PRJEB25583_P_NODE_2745_length_244_cov_8.101449_g2568_i0 PRJEB25583 2745 244 8.101449 19.76753556 Leishmania major 5664 Euglenozoa other_Eukaryota 379 8.889999999999998e-101   NTclustered gi|1207899568|ref|XR_002460820.1| 347515 g2568 i0 94.422 141.44262295082 251 7 100 6 1 244 1513 1763 Leishmania major strain Friedlin 28S ribosomal RNA (LSU-alpha) partial rRNA blastn 34512 379 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania major
8949987 8949987 PRJEB25583_P_NODE_3588_length_213_cov_3.244318_g3411_i0 PRJEB25583 3588 213 3.244318 6.91039734 Bodonidae sp. Dev1 313288 Euglenozoa other_Eukaryota 315 2.17e-81   NTclustered gi|59891941|gb|AY753601.1| 313288 g3411 i0 94.203 81.0798122065728 207 10 96 2 9 213 1294 1088 Bodonidae sp. Dev1 18S ribosomal RNA gene, partial sequence blastn 17270 315 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   Bodonidae sp. Dev1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;