RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB2368" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 5 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJEB2368 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11500915 11500915 PRJEB2368_P_NODE_11050_length_286_cov_1.381526_g10732_i0 PRJEB2368 11050 286 1.381526 3.95116436 Nitrosopumilus zosterae 718286 Archaea Archaea 80.5 1.21e-10   NTclustered gi|2289589374|dbj|AP026695.1| 718286 g10732 i0 85.526 0.538461538461538 76 11 27 0 211 286 1666346 1666421 Nitrosopumilus zosterae NM25 DNA, complete genome blastn 154 80.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus zosterae
11500947 11500947 PRJEB2368_P_NODE_8130_length_287_cov_1.724000_g7812_i0 PRJEB2368 8130 287 1.724 4.94788 Nitrosarchaeum sp. AC2 2259673 Archaea Archaea 113 1.2e-20   NTclustered gi|1869229208|gb|CP030847.1| 2259673 g7812 i0 93.421 0.264808362369338 76 5 26 0 212 287 128857 128932 Nitrosarchaeum sp. AC2 chromosome, complete genome blastn 76 113 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp. AC2
14051062 14051062 PRJEB2368_P_NODE_8912_length_287_cov_1.496000_g8594_i0 PRJEB2368 8912 287 1.496 4.29352 Nitrosarchaeum sp. AC2 2259673 Archaea Archaea 130 1.19e-25   NTclustered gi|1869229208|gb|CP030847.1| 2259673 g8594 i0 97.368 3.95470383275261 76 2 26 0 1 76 103528 103453 Nitrosarchaeum sp. AC2 chromosome, complete genome blastn 1135 130 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp. AC2
16599742 16599742 PRJEB2368_P_NODE_8194_length_287_cov_1.704000_g7876_i0 PRJEB2368 8194 287 1.704 4.89048 Candidatus Nitrosopumilus sediminis 1229909 Archaea Archaea 78.7 4.38e-10   NTclustered gi|407047065|gb|CP003843.1| 1229909 g7876 i0 89.231 0.442508710801394 65 3 22 3 5 67 49121 49059 Candidatus Nitrosopumilus sp. AR2, complete genome blastn 127 78.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Candidatus Nitrosopumilus sediminis
22974904 22974904 PRJEB2368_P_NODE_8499_length_287_cov_1.608000_g8181_i0 PRJEB2368 8499 287 1.608 4.61496 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 130 1.19e-25   NTclustered gi|937513727|gb|CP012850.1| 1353260 g8181 i0 97.368 0.264808362369338 76 2 26 0 212 287 872858 872933 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 76 130 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;