RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB2368" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2368 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12465483 12465483 PRJEB2368_P_NODE_3990_length_397_cov_2.552778_g3679_i0 PRJEB2368 3990 397 2.552778 10.13452866 root 1 Root_unresolved Root_unresolved 97.1 1.73e-15   NTclustered gi|470491713|ref|NR_077054.1| 2097 g3679 i0 86.022 23.4256926952141 93 10 23 3 226 317 551 461 Mycoplasma genitalium strain G-37 23S ribosomal RNA gene, complete sequence blastn 9300 97.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides genitalium
14051079 14051079 PRJEB2368_P_NODE_9752_length_287_cov_1.364000_g9434_i0 PRJEB2368 9752 287 1.364 3.91468 Acholeplasma brassicae 61635 Bacteria Bacteria 141 5.510000000000001e-29   NTclustered gi|549142279|emb|FO681348.1| 61635 g9434 i0 100 0.526132404181185 76 0 53 0 1 76 11027 11102 complete chromosome Acholeplasma brassicae blastn 151 141 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma brassicae
17874476 17874476 PRJEB2368_P_NODE_10375_length_287_cov_1.236000_g10057_i0 PRJEB2368 10375 287 1.236 3.54732 Acholeplasma laidlawii 2148 Bacteria Bacteria 119 2.58e-22   NTclustered gi|2513807229|gb|CP126461.1| 2148 g10057 i0 94.737 1.26132404181185 76 4 53 0 1 76 1209596 1209671 Acholeplasma laidlawii strain 8195 chromosome, complete genome blastn 362 119 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
22974909 22974909 PRJEB2368_P_NODE_8839_length_287_cov_1.512000_g8521_i0 PRJEB2368 8839 287 1.512 4.33944 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 69.4 2.64e-7   NTclustered gi|2621784632|emb|OY781090.1| 1898209 g8521 i0 93.478 3.08710801393728 46 3 16 0 1 46 1075571 1075616 MAG: Acholeplasmataceae bacterium isolate ac846720-52a4-4ed8-8e7a-77cd78ec885f genome assembly, chromosome: 1 blastn 886 69.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;