contig_metadata
16 rows where analysis = "blastn", bioproject = "PRJEB2333" and tax_phylum = "Actinomycetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22864 | 22864 | PRJEB2333_P_NODE_3301_length_404_cov_2.754768_g2525_i0 | PRJEB2333 | 3301 | 404 | 2.754768 | 11.12926272 | Sanguibacter biliveldensis | 3030830 | Bacteria | Bacteria | 525 | 1.8999999999999994e-144 | NTclustered | gi|2621750761|gb|CP138359.1| | 3030830 | g2525 | i0 | 91.601 | 306.44801980198 | 381 | 31 | 98 | 1 | 24 | 404 | 794920 | 794541 | Sanguibacter biliveldensis strain 4.1 chromosome, complete genome | blastn | 123805 | 525 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Sanguibacteraceae | Sanguibacter | Sanguibacter biliveldensis | ||
| 2261424 | 2261424 | PRJEB2333_P_NODE_2442_length_623_cov_2.129693_g1678_i1 | PRJEB2333 | 2442 | 623 | 2.129693 | 13.26798739 | Micrococcus | 1269 | Bacteria | Bacteria | 606 | 1.0499999999999997e-168 | NTclustered | gi|1949953231|gb|CP066288.1| | 1270 | g1678 | i1 | 96.237 | 143.337078651685 | 372 | 11 | 80 | 2 | 1 | 369 | 2260414 | 2260785 | Micrococcus luteus strain FDAARGOS_1034 chromosome | blastn | 89299 | 606 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Micrococcus | Micrococcus luteus | ||
| 6089282 | 6089282 | PRJEB2333_P_NODE_4665_length_156_cov_3.016807_g3888_i0 | PRJEB2333 | 4665 | 156 | 3.016807 | 4.70621892 | Actinomyces | 1654 | Bacteria | Bacteria | 226 | 7.149999999999997e-55 | NTclustered | gi|1948661326|gb|CP066049.1| | 1655 | g3888 | i0 | 93.96 | 225.525641025641 | 149 | 9 | 96 | 0 | 3 | 151 | 295683 | 295831 | Actinomyces naeslundii strain FDAARGOS_1037 chromosome, complete genome | blastn | 35182 | 228 | 0.991228070175439 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Actinomyces | Actinomyces naeslundii | ||
| 7363893 | 7363893 | PRJEB2333_P_NODE_4606_length_158_cov_2.198347_g3829_i0 | PRJEB2333 | 4606 | 158 | 2.198347 | 3.47338826 | root | 1 | Root_unresolved | Root_unresolved | 292 | 7.07e-75 | NTclustered | gi|1226527082|gb|MF578812.1| | 1655 | g3829 | i0 | 100 | 100 | 158 | 0 | 100 | 0 | 1 | 158 | 325 | 482 | Actinomyces naeslundii strain K55 16S ribosomal RNA gene, partial sequence | blastn | 15800 | 292 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Actinomyces | Actinomyces naeslundii | ||
| 8639258 | 8639258 | PRJEB2333_P_NODE_3347_length_399_cov_1.848066_g2571_i0 | PRJEB2333 | 3347 | 399 | 1.848066 | 7.37378334 | Micrococcaceae | 1268 | Bacteria | Bacteria | 248 | 4.54e-61 | NTclustered | gi|1906898532|gb|CP059853.1| | 37929 | g2571 | i0 | 96.078 | 196.428571428571 | 153 | 4 | 70 | 1 | 1 | 153 | 562058 | 562208 | Glutamicibacter nicotianae strain ZM05 chromosome, complete genome | blastn | 78375 | 248 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Glutamicibacter | Glutamicibacter nicotianae | ||
| 11189486 | 11189486 | PRJEB2333_P_NODE_2769_length_489_cov_1.584071_g1998_i0 | PRJEB2333 | 2769 | 489 | 1.584071 | 7.74610719 | Corynebacterium | 1716 | Bacteria | Bacteria | 318 | 4.259999999999999e-82 | NTclustered | gi|2869797333|gb|CP175765.1| | 38304 | g1998 | i0 | 100 | 250.298568507157 | 172 | 0 | 68 | 0 | 318 | 489 | 2720 | 2891 | Corynebacterium tuberculostearicum strain YSMAA5_1_F11 chromosome, complete genome | blastn | 122396 | 318 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium tuberculostearicum | ||
| 16288860 | 16288860 | PRJEB2333_P_NODE_3633_length_228_cov_2.251309_g2856_i0 | PRJEB2333 | 3633 | 228 | 2.251309 | 5.13298452 | Nocardioides | 1839 | Bacteria | Bacteria | 392 | 1.0499999999999997e-104 | NTclustered | gi|1321370352|gb|CP025581.1| | 2045452 | g2856 | i0 | 97.807 | 255.486842105263 | 228 | 4 | 100 | 1 | 1 | 228 | 999333 | 999107 | Nocardioides houyundeii strain 78 chromosome, complete genome | blastn | 58251 | 392 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Nocardioidaceae | Nocardioides | Nocardioides houyundeii | ||
| 17564022 | 17564022 | PRJEB2333_P_NODE_3334_length_400_cov_2.476584_g2558_i0 | PRJEB2333 | 3334 | 400 | 2.476584 | 9.906336 | Micrococcus | 1269 | Bacteria | Bacteria | 233 | 1.2799999999999998e-56 | NTclustered | gi|1891023613|gb|CP058971.1| | 1270 | g2558 | i0 | 98.485 | 133.8675 | 132 | 2 | 33 | 0 | 2 | 133 | 345471 | 345602 | Micrococcus luteus strain V017 chromosome, complete genome | blastn | 53547 | 233 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Micrococcus | Micrococcus luteus | ||
| 17564031 | 17564031 | PRJEB2333_P_NODE_4094_length_180_cov_5.706294_g3317_i0 | PRJEB2333 | 4094 | 180 | 5.706294 | 10.2713292 | Rothia | 32207 | Bacteria | Bacteria | 333 | 4.87e-87 | NTclustered | gi|1247210625|gb|CP023510.1| | 43675 | g3317 | i0 | 100 | 313.716666666667 | 180 | 0 | 100 | 0 | 1 | 180 | 651955 | 651776 | Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome | blastn | 56469 | 333 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 20112697 | 20112697 | PRJEB2333_P_NODE_3856_length_198_cov_6.608696_g3079_i0 | PRJEB2333 | 3856 | 198 | 6.608696 | 13.08521808 | Micrococcaceae | 1268 | Bacteria | Bacteria | 366 | 5.4e-97 | NTclustered | gi|1906898532|gb|CP059853.1| | 37929 | g3079 | i0 | 100 | 408.752525252525 | 198 | 0 | 100 | 0 | 1 | 198 | 100856 | 100659 | Glutamicibacter nicotianae strain ZM05 chromosome, complete genome | blastn | 80933 | 366 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Glutamicibacter | Glutamicibacter nicotianae | ||
| 21699594 | 21699594 | PRJEB2333_P_NODE_4178_length_175_cov_2.420290_g3401_i0 | PRJEB2333 | 4178 | 175 | 2.42029 | 4.2355075 | Lawsonella clevelandensis | 1528099 | Bacteria | Bacteria | 274 | 2.89e-69 | NTclustered | gi|2694275225|gb|CP140010.1| | 1528099 | g3401 | i0 | 94.857 | 255.634285714286 | 175 | 9 | 100 | 0 | 1 | 175 | 1854078 | 1854252 | MAG: Lawsonella clevelandensis isolate TECA_312545_bc_10 chromosome | blastn | 44736 | 274 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Lawsonellaceae | Lawsonella | Lawsonella clevelandensis | ||
| 23938479 | 23938479 | PRJEB2333_P_NODE_2339_length_686_cov_3.027735_g1583_i0 | PRJEB2333 | 2339 | 686 | 3.027735 | 20.7702621 | Rothia | 32207 | Bacteria | Bacteria | 619 | 1.4999999999999996e-172 | NTclustered | gi|1247210625|gb|CP023510.1| | 43675 | g1583 | i0 | 94.541 | 309.316326530612 | 403 | 18 | 92 | 4 | 287 | 686 | 1004404 | 1004003 | Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome | blastn | 212191 | 619 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 25212230 | 25212230 | PRJEB2333_P_NODE_2440_length_623_cov_2.378840_g1678_i0 | PRJEB2333 | 2440 | 623 | 2.37884 | 14.8201732 | Micrococcus | 1269 | Bacteria | Bacteria | 597 | 6.329999999999999e-166 | NTclustered | gi|1949953231|gb|CP066288.1| | 1270 | g1678 | i0 | 96.185 | 143.199036918138 | 367 | 11 | 79 | 2 | 260 | 623 | 2260780 | 2260414 | Micrococcus luteus strain FDAARGOS_1034 chromosome | blastn | 89213 | 597 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Micrococcus | Micrococcus luteus | ||
| 25212236 | 25212236 | PRJEB2333_P_NODE_2680_length_513_cov_1.861345_g1910_i0 | PRJEB2333 | 2680 | 513 | 1.861345 | 9.54869985 | Mycobacteriales | 85007 | Bacteria | Bacteria | 390 | 9.37e-104 | NTclustered | gi|2663843834|gb|CP143053.1| | 321318 | g1910 | i0 | 95.528 | 137.884990253411 | 246 | 8 | 47 | 2 | 271 | 513 | 853464 | 853709 | Dietzia cinnamea strain 55 chromosome | blastn | 70735 | 390 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Dietziaceae | Dietzia | Dietzia cinnamea | ||
| 25212248 | 25212248 | PRJEB2333_P_NODE_3300_length_404_cov_3.160763_g2524_i0 | PRJEB2333 | 3300 | 404 | 3.160763 | 12.76948252 | Rothia | 32207 | Bacteria | Bacteria | 640 | 6.5e-179 | NTclustered | gi|1247210625|gb|CP023510.1| | 43675 | g2524 | i0 | 95.297 | 278.299504950495 | 404 | 17 | 99 | 2 | 1 | 403 | 651955 | 651553 | Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome | blastn | 112433 | 645 | 0.992248062015504 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 25212253 | 25212253 | PRJEB2333_P_NODE_3580_length_240_cov_2.871921_g2803_i0 | PRJEB2333 | 3580 | 240 | 2.871921 | 6.8926104 | Micrococcus | 1269 | Bacteria | Bacteria | 394 | 3.11e-105 | NTclustered | gi|1891023613|gb|CP058971.1| | 1270 | g2803 | i0 | 96.25 | 260.1125 | 240 | 9 | 100 | 0 | 1 | 240 | 346591 | 346352 | Micrococcus luteus strain V017 chromosome, complete genome | blastn | 62427 | 394 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Micrococcus | Micrococcus luteus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;