RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB2333" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 5 ✖

bioproject 1

  • PRJEB2333 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
986148 986148 PRJEB2333_P_NODE_3661_length_224_cov_1.614973_g2884_i0 PRJEB2333 3661 224 1.614973 3.61753952 Eukaryota 2759 Plants Plants 414 2.1999999999999996e-111   NTclustered gi|1714003650|gb|MN243923.1| 3079 g2884 i0 100 99.3883928571429 224 0 100 0 1 224 557 780 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 22263 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
7363862 7363862 PRJEB2333_P_NODE_3046_length_439_cov_1.325871_g2271_i0 PRJEB2333 3046 439 1.325871 5.82057369 Magnoliopsida 3398 Plants Plants 267 1.39e-66   NTclustered gi|2154030858|gb|OK440405.1| 3702 g2271 i0 100 416.396355353075 144 0 51 0 1 144 7515743 7515600 Arabidopsis thaliana, partial genome blastn 182798 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
7363878 7363878 PRJEB2333_P_NODE_4026_length_186_cov_0.885906_g3249_i0 PRJEB2333 4026 186 0.885906 1.64778516 Chlorellales 35460 Plants Plants 252 1.46e-62   NTclustered gi|723457039|ref|NC_025540.1| 249350 g3249 i0 90.957 157.55376344086 188 15 100 1 1 186 2918 2731 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 29305 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
13739604 13739604 PRJEB2333_P_NODE_3211_length_415_cov_6.412698_g2436_i0 PRJEB2333 3211 415 6.412698 26.6126967 Magnoliopsida 3398 Plants Plants 289 2.7899999999999996e-73   NTclustered gi|2699132188|emb|OZ022203.1| 3755 g2436 i0 100 63.4409638554217 156 0 57 0 260 415 1211182 1211337 Prunus dulcis genome assembly, chromosome: 7 blastn 26328 289 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus dulcis
25212254 25212254 PRJEB2333_P_NODE_3600_length_234_cov_6.289340_g2823_i0 PRJEB2333 3600 234 6.28934 14.7170556 Streptophyta 35493 Plants Plants 119 2.04e-22   NTclustered gi|8099444|gb|AF226036.1| 3234 g2823 i0 85.124 38.2735042735043 121 12 51 5 13 132 379 264 Anthoceros punctatus 26S ribosomal RNA gene, partial sequence blastn 8956 119 1 Eukaryota Embryophyta Viridiplantae Streptophyta Anthocerotopsida Anthocerotales Anthocerotaceae Anthoceros Anthoceros punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;