RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB2333" and tax_kingdom = "Fungi"

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tax_superkingdom 1

tax_kingdom 1

  • Fungi · 10 ✖

tax_clade 1

bioproject 1

  • PRJEB2333 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22863 22863 PRJEB2333_P_NODE_3181_length_419_cov_1.921466_g2406_i0 PRJEB2333 3181 419 1.921466 8.05094254 uncultured fungus 175245 Fungi Fungi 287 1.02e-72   NTclustered gi|339831059|gb|JN112072.1| 175245 g2406 i0 99.371 41.8042959427208 159 0 38 1 1 159 263 420 Uncultured fungus clone DLQAOB9C13 28S ribosomal RNA gene, partial sequence blastn 17516 287 1 Eukaryota Opisthokonta Fungi           uncultured fungus
22865 22865 PRJEB2333_P_NODE_4601_length_158_cov_2.785124_g3824_i0 PRJEB2333 4601 158 2.785124 4.40049592 uncultured fungus 175245 Fungi Fungi 283 4.2499999999999995e-72   NTclustered gi|2159202025|emb|OU940232.1| 175245 g3824 i0 99.359 100.746835443038 156 1 99 0 3 158 1284 1439 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01527 blastn 15918 283 1 Eukaryota Opisthokonta Fungi           uncultured fungus
4813968 4813968 PRJEB2333_P_NODE_3164_length_422_cov_1.350649_g2389_i0 PRJEB2333 3164 422 1.350649 5.69973878 Eukaryota 2759 Fungi Fungi 84.2 1.44e-11   NTclustered gi|441431095|gb|JX974793.1| 175245 g2389 i0 86.667 4.18720379146919 75 10 18 0 320 394 751 677 Uncultured fungus clone D281 internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, region blastn 1767 84.2 1 Eukaryota Opisthokonta Fungi           uncultured fungus
7363852 7363852 PRJEB2333_P_NODE_2606_length_540_cov_11.176938_g1837_i0 PRJEB2333 2606 540 11.176938 60.3554652 Alternaria 5598 Fungi Fungi 540 9.29e-149   NTclustered gi|289449248|dbj|AB517938.1| 5599 g1837 i0 99.661 66.7185185185185 295 1 77 0 1 295 876 582 Alternaria alternata gene for 28S ribosomal RNA, partial sequence blastn 36028 545 0.990825688073395 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
7675148 7675148 PRJEB2333_P_NODE_3647_length_226_cov_5.275132_g2870_i0 PRJEB2333 3647 226 5.275132 11.92179832 Malassezia restricta 76775 Fungi Fungi 418 1.7199999999999998e-112   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g2870 i0 100 100.185840707965 226 0 100 0 1 226 1720 1945 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 22642 418 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
18837953 18837953 PRJEB2333_P_NODE_3495_length_281_cov_2.200820_g2718_i0 PRJEB2333 3495 281 2.20082 6.1843042 Chytriomycetaceae 1352827 Fungi Fungi 141 5.37e-29   NTclustered gi|1866582500|gb|MT730675.1| 109932 g2718 i0 87.2 55.0498220640569 125 15 44 1 1 125 4349 4226 Entophlyctis luteolus isolate JEL0129 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15469 141 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
18837961 18837961 PRJEB2333_P_NODE_3775_length_207_cov_1.711765_g2998_i0 PRJEB2333 3775 207 1.711765 3.54335355 Dothideomycetes 147541 Fungi Fungi 327 2.69e-85   NTclustered gi|2749640508|ref|XR_010715598.1| 5022 g2998 i0 99.448 103.328502415459 181 0 87 1 1 181 3248 3427 Leptosphaeria maculans 28S ribosomal RNA (IAQ61_009836), rRNA blastn 21389 327 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Leptosphaeriaceae Plenodomus Plenodomus lingam
22663103 22663103 PRJEB2333_P_NODE_3658_length_224_cov_2.663102_g2881_i0 PRJEB2333 3658 224 2.663102 5.96534848 Eukaryota 2759 Fungi Fungi 196 8.69e-46   NTclustered gi|73990900|emb|AM039516.1| 211099 g2881 i0 85.492 88.3794642857143 193 22 85 4 35 224 911 722 Hanseniaspora clermontiae partial tef1 gene for translation elongation factor 1-alpha, strain CBS 8821 blastn 19797 196 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycodales Saccharomycodaceae Hanseniaspora Hanseniaspora clermontiae
23938496 23938496 PRJEB2333_P_NODE_3199_length_417_cov_2.023684_g2424_i0 PRJEB2333 3199 417 2.023684 8.43876228 Fungi 4751 Fungi Fungi 233 1.3299999999999998e-56   NTclustered gi|6715474|gb|AF218791.1|AF218791 5599 g2424 i0 100 51.4340527577938 126 0 59 0 1 126 1634 1509 Alternaria alternata internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; 28S ribosomal RNA gene, partial sequence; and 18S ribosomal RNA gene, complete sequence blastn 21448 233 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
23938505 23938505 PRJEB2333_P_NODE_3819_length_202_cov_2.351515_g3042_i0 PRJEB2333 3819 202 2.351515 4.7500603 Eukaryota 2759 Fungi Fungi 372 1.19e-98   NTclustered gi|514829572|gb|KC771883.1| 4929 g3042 i0 100 83.5792079207921 201 0 99 0 1 201 132 332 Meyerozyma guilliermondii strain SNP3S 26S ribosomal RNA gene, partial sequence blastn 16883 372 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Meyerozyma Meyerozyma guilliermondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;