RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB2333" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB2333 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7363876 7363876 PRJEB2333_P_NODE_3846_length_199_cov_3.709877_g3069_i0 PRJEB2333 3846 199 3.709877 7.38265523 Leptopharynx 502089 SAR_Eukaryotes SAR_Eukaryotes 363 7.019999999999998e-96   NTclustered gi|2125425273|gb|OK663150.1| 187299 g3069 i0 99.497 96.2763819095477 199 1 100 0 1 199 575 377 Uncultured ciliate isolate DGGE gel band clone C81 small subunit ribosomal RNA gene, partial sequence blastn 19159 363 1 Eukaryota Sar   Ciliophora         uncultured ciliate
9914316 9914316 PRJEB2333_P_NODE_3648_length_226_cov_3.365079_g2871_i0 PRJEB2333 3648 226 3.365079 7.60507854 root 1 Root_unresolved Root_unresolved 102 1.97e-17   NTclustered gi|219903754|emb|FM955257.1| 2996 g2871 i0 90.909 34.216814159292 77 6 34 1 55 130 1774 1850 Hydrurus foetidus partial 28S rRNA gene blastn 7733 102 1 Eukaryota Sar     Chrysophyceae Hydrurales Hydruraceae Hydrurus Hydrurus foetidus
15014037 15014037 PRJEB2333_P_NODE_4132_length_178_cov_1.503546_g3355_i0 PRJEB2333 4132 178 1.503546 2.67631188 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 117 5.26e-22   NTclustered gi|166042668|emb|CU350907.1| 100861 g3355 i0 78.977 97.1685393258427 176 33 98 3 5 178 621 794 Aphanomyces euteiches cDNA blastn 17296 117 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
15325037 15325037 PRJEB2333_P_NODE_3893_length_195_cov_2.626582_g3116_i0 PRJEB2333 3893 195 2.626582 5.1218349 Schizochytrium aggregatum 4773 SAR_Eukaryotes SAR_Eukaryotes 154 4.49e-33   NTclustered gi|85822990|gb|DQ356661.1| 4773 g3116 i0 81.25 87.3384615384615 192 34 98 2 5 195 632 822 Schizochytrium aggregatum actin gene, partial cds blastn 17031 154 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium aggregatum
17564021 17564021 PRJEB2333_P_NODE_3314_length_403_cov_0.825137_g2538_i0 PRJEB2333 3314 403 0.825137 3.32530211 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 147 1.72e-30   NTclustered gi|16326556|gb|AF409124.1| 2829 g2538 i0 96.591 38.0967741935484 88 3 39 0 316 403 3431 3518 Heterosigma akashiwo internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 15353 147 1 Eukaryota Sar     Raphidophyceae Chattonellales Chattonellaceae Heterosigma Heterosigma akashiwo
20112712 20112712 PRJEB2333_P_NODE_4436_length_164_cov_1.724409_g3659_i0 PRJEB2333 4436 164 1.724409 2.82803076 Leptopharynx 502089 SAR_Eukaryotes SAR_Eukaryotes 298 1.59e-76   NTclustered gi|318083432|gb|HQ668467.1| 502090 g3659 i0 99.39 93.140243902439 164 1 100 0 1 164 1614 1451 Leptopharynx costatus 18S ribosomal RNA gene, partial sequence; macronuclear blastn 15275 298 1 Eukaryota Sar   Ciliophora Nassophorea Microthoracida Microthoracidae Leptopharynx Leptopharynx costatus
25212282 25212282 PRJEB2333_P_NODE_4860_length_151_cov_1.578947_g4083_i0 PRJEB2333 4860 151 1.578947 2.38420997 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 279 5.19e-71   NTclustered gi|111035921|emb|AJ781306.1| 5908 g4083 i0 100 84.9470198675497 151 0 100 0 1 151 465 315 Tetrahymena pyriformis partial 23S rRNA gene, strain CCAP 1630/1W blastn 12827 279 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;