RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB2333" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJEB2333 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6089223 6089223 PRJEB2333_P_NODE_1745_length_1159_cov_31.619430_g1089_i0 PRJEB2333 1745 1159 31.61943 366.4691937 Ripella 1217112 Discosea other_Eukaryota 867 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1089 i0 94.671 76.9352890422778 563 23 76 7 530 1088 560 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 89168 867 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
8639226 8639226 PRJEB2333_P_NODE_2127_length_821_cov_33.294643_g1089_i3 PRJEB2333 2127 821 33.294643 273.34901903 Ripella 1217112 Discosea other_Eukaryota 867 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1089 i3 94.671 68.9135200974421 563 23 76 7 192 750 560 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 56578 867 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
13739581 13739581 PRJEB2333_P_NODE_2111_length_828_cov_33.098609_g1089_i1 PRJEB2333 2111 828 33.098609 274.05648252 Ripella 1217112 Discosea other_Eukaryota 867 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1089 i1 94.671 68.3309178743961 563 23 76 7 72 630 1 560 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 56578 867 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
22663074 22663074 PRJEB2333_P_NODE_2118_length_825_cov_33.017766_g1089_i2 PRJEB2333 2118 825 33.017766 272.3965695 Ripella 1217112 Discosea other_Eukaryota 867 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1089 i2 94.671 68.5321212121212 563 23 71 7 72 630 1 560 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 56539 867 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
23938502 23938502 PRJEB2333_P_NODE_3719_length_215_cov_1.646067_g2942_i0 PRJEB2333 3719 215 1.646067 3.53904405 Dictyostelium 5782 Evosea other_Eukaryota 132 2.37e-26   NTclustered gi|2367630|gb|AF016242.1|AF016242 44689 g2942 i0 78.341 49.3395348837209 217 37 97 6 1 209 392 606 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds blastn 10608 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;