RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB20058" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB20058 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25787723 25787723 PRJEB20058_P_NODE_166051_length_292_cov_4.277056_g163228_i0 PRJEB20058 166051 292 4.277056 12.48900352 Desulfurococcus amylolyticus DSM 16532 768672 Archaea Archaea 416 8.329999999999997e-112   NTclustered gi|390190859|gb|CP003321.1| 768672 g163228 i0 94.444 1.84931506849315 270 15 92 0 23 292 681881 681612 Desulfurococcus fermentans DSM 16532, complete genome blastn 540 416 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus Desulfurococcus amylolyticus
26194237 26194237 PRJEB20058_P_NODE_12150_length_1191_cov_5.726549_g10528_i0 PRJEB20058 12150 1191 5.726549 68.20319859 uncultured crenarchaeote 29281 Archaea Archaea 2061 0   NTclustered gi|82618476|gb|DQ278124.1| 29281 g10528 i0 99.299 96.1771620486986 1141 7 96 1 21 1160 1375 235 Uncultured crenarchaeote clone OdenB-100iib 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence blastn 114547 2061 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
26428616 26428616 PRJEB20058_P_NODE_13479_length_1129_cov_51.135768_g3170_i2 PRJEB20058 13479 1129 51.135768 577.32282072 Thermoproteati 1783275 Archaea Archaea 1129 0   NTclustered gi|22797874|emb|AJ496176.1| 29281 g3170 i2 97.317 56.1133746678477 671 7 59 6 1 670 8188 8848 Uncultured crenarchaeote 34 kb genomic fragment blastn 63352 1129 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;