RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB20058" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB20058 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25789662 25789662 PRJEB20058_P_NODE_212019_length_248_cov_0.951872_g209195_i0 PRJEB20058 212019 248 0.951872 2.36064256 Rubrivirga sp. IMCC452 1885344 Bacteria Bacteria 303 5.61e-78   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g209195 i0 88.98 35.3709677419355 245 27 99 0 4 248 1028811 1029055 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 8772 303 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
25791419 25791419 PRJEB20058_P_NODE_33683_length_723_cov_5.345921_g31124_i0 PRJEB20058 33683 723 5.345921 38.65100883 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 915 0   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g31124 i0 89.438 600.44398340249 729 71 100 5 1 723 807191 806463 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 434121 915 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
26201635 26201635 PRJEB20058_P_NODE_64406_length_521_cov_3.530435_g61641_i0 PRJEB20058 64406 521 3.530435 18.39356635 Rubrivirga sp. IMCC452 1885344 Bacteria Bacteria 580 5.2699999999999986e-161   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g61641 i0 90.293 98.9289827255278 443 43 85 0 9 451 1513040 1513482 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 51542 580 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;