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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJEB20058" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 31 ✖

tax_clade 1

bioproject 1

  • PRJEB20058 · 31 ✖

analysis 1

  • blastn · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6089063 6089063 PRJEB20058_S_NODE_5165_length_268_cov_6.666667_g5127_i0 PRJEB20058 5165 268 6.666667 17.86666756 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 457 4.45e-124   NTclustered gi|338798067|gb|HQ665128.1| 82934 g5127 i0 100 92.1679104477612 247 0 92 0 22 268 74 320 Pythium coloratum isolate CBS 154.64 28S large subunit ribosomal RNA gene, partial sequence blastn 24701 457 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium coloratum
22974798 22974798 PRJEB20058_S_NODE_7279_length_208_cov_5.755102_g7241_i0 PRJEB20058 7279 208 5.755102 11.97061216 Peronospora variabilis 162102 SAR_Eukaryotes SAR_Eukaryotes 348 2.07e-91   NTclustered gi|23306494|gb|AY035477.1| 162102 g7241 i0 98.01 96.6346153846154 201 3 96 1 1 200 278 78 Peronospora variabilis isolate MG 8-6 large subunit ribosomal RNA gene, partial sequence blastn 20100 348 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora variabilis
25519509 25519509 PRJEB20058_P_NODE_33945_length_720_cov_74.631259_g31379_i0 PRJEB20058 33945 720 74.631259 537.3450648 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 135 6.95e-27   NTclustered gi|189458744|emb|CU694966.7| 123356 g31379 i0 98.684 2.43333333333333 76 1 11 0 88 163 100494 100419 H.parasitica DNA sequence from clone HpEmoy2-17I18, complete sequence blastn 1752 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
25521832 25521832 PRJEB20058_P_NODE_77073_length_472_cov_68.902676_g74293_i0 PRJEB20058 77073 472 68.902676 325.22063072 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 156 3.4e-33   NTclustered gi|2794923712|ref|XM_067882169.1| 164328 g74293 i0 81.967 24.9661016949153 183 33 39 0 268 450 753 571 Phytophthora ramorum 60S ribosomal protein L8 (KRP23_11606), partial mRNA blastn 11784 156 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
25612448 25612448 PRJEB20058_P_NODE_137977_length_332_cov_2.361624_g135156_i0 PRJEB20058 137977 332 2.361624 7.84059168 root 1 Root_unresolved Root_unresolved 592 1.49e-164   NTclustered gi|166046614|emb|CU367731.1| 100861 g135156 i0 99.387 37.066265060241 326 2 98 0 7 332 372 47 Aphanomyces euteiches cDNA blastn 12306 592 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25648825 25648825 PRJEB20058_P_NODE_103098_length_400_cov_3.035398_g100291_i0 PRJEB20058 103098 400 3.035398 12.141592 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 638 2.31e-178   NTclustered gi|166046673|emb|CU367783.1| 100861 g100291 i0 99.713 91.0925 348 1 87 0 53 400 565 218 Aphanomyces euteiches cDNA blastn 36437 638 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25652363 25652363 PRJEB20058_P_NODE_185138_length_270_cov_3.129187_g182315_i0 PRJEB20058 185138 270 3.129187 8.4488049 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 374 4.6499999999999986e-99   NTclustered gi|325194400|emb|FR825235.1| 890382 g182315 i0 93.307 0.940740740740741 254 16 94 1 1 254 309 57 Albugo laibachii Nc14, genomic contig CONTIG_1919_NC14_v4_1334_11268 blastn 254 374 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
25655864 25655864 PRJEB20058_P_NODE_43026_length_641_cov_6.594828_g40361_i0 PRJEB20058 43026 641 6.594828 42.27284748 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 405 4.24e-108   NTclustered gi|695385590|ref|XM_009520025.1| 67593 g40361 i0 83.827 4.17160686427457 439 57 68 9 21 458 616 1041 Phytophthora sojae hypothetical protein mRNA blastn 2674 405 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
25749388 25749388 PRJEB20058_P_NODE_181634_length_274_cov_2.366197_g178811_i0 PRJEB20058 181634 274 2.366197 6.48337978 root 1 Root_unresolved Root_unresolved 501 2.08e-137   NTclustered gi|166046558|emb|CU367675.1| 100861 g178811 i0 99.635 103.748175182482 274 1 100 0 1 274 693 420 Aphanomyces euteiches cDNA blastn 28427 501 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25751065 25751065 PRJEB20058_P_NODE_60442_length_539_cov_2.516736_g57682_i0 PRJEB20058 60442 539 2.516736 13.56520704 root 1 Root_unresolved Root_unresolved 985 0   NTclustered gi|166046686|emb|CU367796.1| 100861 g57682 i0 99.629 80.7792207792208 539 2 100 0 1 539 747 209 Aphanomyces euteiches cDNA blastn 43540 990 0.994949494949495 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25785853 25785853 PRJEB20058_P_NODE_122907_length_359_cov_2.063758_g120090_i0 PRJEB20058 122907 359 2.063758 7.40889122 Peronospora lamii 162118 SAR_Eukaryotes SAR_Eukaryotes 503 7.81e-138   NTclustered gi|33520223|gb|AY273968.1| 162118 g120090 i0 92.157 99.7938718662953 357 27 99 1 3 359 140 495 Peronospora lamii large subunit ribosomal RNA gene, partial sequence blastn 35826 503 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora lamii
25794487 25794487 PRJEB20058_P_NODE_92067_length_427_cov_21.950820_g89268_i0 PRJEB20058 92067 427 21.95082 93.7300014 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 527 5.609999999999998e-145   NTclustered gi|325195057|emb|FR825852.1| 890382 g89268 i0 98.98 64.9250585480094 294 3 95 0 112 405 179 472 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 27723 527 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
25884770 25884770 PRJEB20058_P_NODE_157491_length_303_cov_3.252747_g154668_i0 PRJEB20058 157491 303 3.252747 9.85582341 root 1 Root_unresolved Root_unresolved 555 1.7599999999999995e-153   NTclustered gi|166046519|emb|CU367636.1| 100861 g154668 i0 99.67 100.19801980198 303 1 100 0 1 303 96 398 Aphanomyces euteiches cDNA blastn 30360 560 0.991071428571429 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25886159 25886159 PRJEB20058_P_NODE_29219_length_775_cov_55.743697_g26783_i0 PRJEB20058 29219 775 55.743697 432.01365175 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 372 5.249999999999999e-98   NTclustered gi|695396854|ref|XM_009523296.1| 67593 g26783 i0 80.577 39.2748387096774 520 70 66 17 236 749 2636 2142 Phytophthora sojae putative GTP-binding ADP-ribosylation factor mRNA blastn 30438 372 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
25922835 25922835 PRJEB20058_P_NODE_140972_length_327_cov_3.090226_g138151_i0 PRJEB20058 140972 327 3.090226 10.10503902 Elongisporangium undulatum 127444 SAR_Eukaryotes SAR_Eukaryotes 507 5.46e-139   NTclustered gi|33520249|gb|AY273994.1| 127444 g138151 i0 94.785 99.9816513761468 326 16 99 1 1 325 420 95 Pythium undulatum large subunit ribosomal RNA gene, partial sequence blastn 32694 507 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Elongisporangium Elongisporangium undulatum
25925483 25925483 PRJEB20058_P_NODE_203100_length_254_cov_1.595855_g200276_i0 PRJEB20058 203100 254 1.595855 4.0534717 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 464 2.4999999999999994e-126   NTclustered gi|33520233|gb|AY273978.1| 143451 g200276 i0 99.606 100.535433070866 254 1 100 0 1 254 474 727 Plasmopara viticola large subunit ribosomal RNA gene, partial sequence blastn 25536 464 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
26020524 26020524 PRJEB20058_P_NODE_121492_length_361_cov_171.113333_g118675_i0 PRJEB20058 121492 361 171.113333 617.71913213 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 656 0   NTclustered gi|505574768|gb|AY598633.2| 82934 g118675 i0 99.446 99.3601108033241 361 2 100 0 1 361 2613 2973 Pythium coloratum strain CBS 154.64 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 35869 662 0.990936555891239 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium coloratum
26021250 26021250 PRJEB20058_P_NODE_166316_length_292_cov_1.761905_g163493_i0 PRJEB20058 166316 292 1.761905 5.1447626 root 1 Root_unresolved Root_unresolved 510 3.71e-140   NTclustered gi|166044608|emb|CU367517.1| 100861 g163493 i0 100 94.2842465753425 276 0 95 0 17 292 444 719 Aphanomyces euteiches cDNA blastn 27531 510 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26021325 26021325 PRJEB20058_P_NODE_172420_length_284_cov_11.062780_g169597_i0 PRJEB20058 172420 284 11.06278 31.4182952 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 503 6.02e-138   NTclustered gi|2080643789|dbj|LC592690.1| 92964 g169597 i0 98.592 99.7288732394366 284 4 100 0 1 284 628 911 Pythium monospermum Mz20_01 genes for 5.8S rRNA, ITS2, and 28S rRNA, partial and complete sequence blastn 28323 508 0.990157480314961 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
26058026 26058026 PRJEB20058_P_NODE_124589_length_355_cov_63.428571_g121771_i0 PRJEB20058 124589 355 63.428571 225.17142705 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 102 3.29e-17   NTclustered gi|2795045055|ref|XM_067937582.1| 4785 g121771 i0 91.892 4.36338028169014 74 4 20 1 263 334 320 247 Phytophthora cinnamomi ribosomal protein L34 (IUM83_12935), partial mRNA blastn 1549 102 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
26059826 26059826 PRJEB20058_P_NODE_165317_length_293_cov_3.051724_g162494_i0 PRJEB20058 165317 293 3.051724 8.94155132 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 499 8.069999999999998e-137   NTclustered gi|166046654|emb|CU367771.1| 100861 g162494 i0 99.275 32.9453924914676 276 2 94 0 18 293 304 29 Aphanomyces euteiches cDNA blastn 9653 499 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26158456 26158456 PRJEB20058_P_NODE_242069_length_211_cov_4.260000_g239244_i0 PRJEB20058 242069 211 4.26 8.9886 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 254 4.73e-63   NTclustered gi|1357626976|gb|MH040878.1| 179533 g239244 i0 92.655 83.8957345971564 177 12 84 1 35 211 461 286 Uncultured Oomycota clone Soil_31 small subunit ribosomal RNA gene, partial sequence blastn 17702 254 1 Eukaryota Sar   Oomycota         uncultured Oomycota
26195926 26195926 PRJEB20058_P_NODE_158694_length_301_cov_18.662500_g155871_i0 PRJEB20058 158694 301 18.6625 56.174125 Saprolegnia parasitica CBS 223.65 695850 SAR_Eukaryotes SAR_Eukaryotes 86.1 2.76e-12   NTclustered gi|813158217|ref|XM_012347020.1| 695850 g155871 i0 86.585 26.7840531561462 82 5 26 4 76 154 558 636 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 8062 86.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
26292234 26292234 PRJEB20058_P_NODE_105278_length_395_cov_2.769461_g102470_i0 PRJEB20058 105278 395 2.769461 10.93937095 root 1 Root_unresolved Root_unresolved 719 0   NTclustered gi|166046677|emb|CU367787.1| 100861 g102470 i0 99.494 100.845569620253 395 2 100 0 1 395 85 479 Aphanomyces euteiches cDNA blastn 39834 719 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26293321 26293321 PRJEB20058_P_NODE_175670_length_281_cov_1.409091_g172847_i0 PRJEB20058 175670 281 1.409091 3.95954571 root 1 Root_unresolved Root_unresolved 460 3.629999999999999e-125   NTclustered gi|166046630|emb|CU367747.1| 100861 g172847 i0 99.605 52.4946619217082 253 0 90 1 30 281 633 381 Aphanomyces euteiches cDNA blastn 14751 460 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26333907 26333907 PRJEB20058_P_NODE_212143_length_248_cov_0.951872_g209319_i0 PRJEB20058 212143 248 0.951872 2.36064256 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 224 4.489999999999999e-54   NTclustered gi|325195233|emb|FR826028.1| 890382 g209319 i0 100 0.69758064516129 121 0 49 0 128 248 1 121 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 173 224 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
26334589 26334589 PRJEB20058_P_NODE_229519_length_232_cov_8.298246_g226694_i0 PRJEB20058 229519 232 8.298246 19.25193072 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 147 9.25e-31   NTclustered gi|2794912885|ref|XM_067891771.1| 164328 g226694 i0 80.978 0.793103448275862 184 35 79 0 32 215 2829 2646 Phytophthora ramorum DNA ligase 1 (KRP23_6564), partial mRNA blastn 184 147 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
26429179 26429179 PRJEB20058_P_NODE_171631_length_285_cov_10.388393_g168808_i0 PRJEB20058 171631 285 10.388393 29.60692005 root 1 Root_unresolved Root_unresolved 488 1.6899999999999999e-133   NTclustered gi|166046724|emb|CU367834.1| 100861 g168808 i0 100 18.8877192982456 264 0 93 0 22 285 612 349 Aphanomyces euteiches cDNA blastn 5383 488 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26465669 26465669 PRJEB20058_P_NODE_108064_length_389_cov_3.878049_g105253_i0 PRJEB20058 108064 389 3.878049 15.08561061 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 627 4.859999999999999e-175   NTclustered gi|2440150|emb|X75631.1| 4788 g105253 i0 95.663 99.5321336760925 392 13 100 4 1 389 2724 3114 P.megasperma gene for 28S ribosomal RNA blastn 38718 627 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
26470755 26470755 PRJEB20058_P_NODE_226056_length_237_cov_2.034091_g223231_i0 PRJEB20058 226056 237 2.034091 4.82079567 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 113 9.62e-21   NTclustered gi|2794911353|ref|XM_067891342.1| 164328 g223231 i0 81.507 1.20253164556962 146 19 60 6 78 219 676 535 Phytophthora ramorum 60S ribosomal protein L6 (KRP23_6181), partial mRNA blastn 285 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
26567028 26567028 PRJEB20058_P_NODE_58248_length_549_cov_15.440574_g55493_i0 PRJEB20058 58248 549 15.440574 84.76875126 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 409 2.7799999999999997e-109   NTclustered gi|695382413|ref|XM_009519098.1| 67593 g55493 i0 86.28 48.4663023679417 379 48 69 4 157 533 644 268 Phytophthora sojae hypothetical protein mRNA blastn 26608 409 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;