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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJEB20058" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB20058 · 31 ✖

analysis 1

  • blastn · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16599603 16599603 PRJEB20058_S_NODE_6374_length_230_cov_30.017751_g6336_i0 PRJEB20058 6374 230 30.017751 69.0408273 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.006   NTclustered gi|1557394408|emb|LR031564.1| 45931 g6336 i0 100 0.126086956521739 29 0 13 0 202 230 53 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25513494 25513494 PRJEB20058_P_NODE_116393_length_371_cov_14.354839_g113578_i0 PRJEB20058 116393 371 14.354839 53.25645269 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.01   NTclustered gi|1557394408|emb|LR031564.1| 45931 g113578 i0 100 0.078167115902965 29 0 8 0 343 371 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25516185 25516185 PRJEB20058_P_NODE_177601_length_278_cov_49.138249_g174778_i0 PRJEB20058 177601 278 49.138249 136.60433222 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g174778 i0 100 0.100719424460432 28 0 10 0 251 278 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25521999 25521999 PRJEB20058_P_NODE_80481_length_461_cov_24.860000_g77698_i0 PRJEB20058 80481 461 24.86 114.6046 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.012   NTclustered gi|687866183|emb|LK927980.1| 6239 g77698 i0 100 0.125813449023861 29 0 6 0 115 143 8248 8220 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000070 blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25650897 25650897 PRJEB20058_P_NODE_150002_length_313_cov_46.634921_g147180_i0 PRJEB20058 150002 313 46.634921 145.96730273 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g147180 i0 100 0.0894568690095847 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25651981 25651981 PRJEB20058_P_NODE_175858_length_280_cov_30.283105_g173035_i0 PRJEB20058 175858 280 30.283105 84.792694 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g173035 i0 100 0.1 28 0 10 0 9 36 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25654138 25654138 PRJEB20058_P_NODE_228690_length_233_cov_8.093023_g225865_i0 PRJEB20058 228690 233 8.093023 18.85674359 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g225865 i0 100 0.120171673819742 28 0 12 0 206 233 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25654452 25654452 PRJEB20058_P_NODE_238066_length_219_cov_10.835443_g235241_i0 PRJEB20058 238066 219 10.835443 23.72962017 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g235241 i0 100 0.127853881278539 28 0 13 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25654653 25654653 PRJEB20058_P_NODE_244690_length_205_cov_10.354167_g241865_i0 PRJEB20058 244690 205 10.354167 21.22604235 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g241865 i0 100 0.136585365853659 28 0 14 0 178 205 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25785279 25785279 PRJEB20058_P_NODE_110099_length_384_cov_119.439628_g107288_i0 PRJEB20058 110099 384 119.439628 458.64817152 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.01   NTclustered gi|1557394408|emb|LR031564.1| 45931 g107288 i0 100 0.0755208333333333 29 0 8 0 1 29 25 53 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25922547 25922547 PRJEB20058_P_NODE_134252_length_338_cov_10.942238_g131432_i0 PRJEB20058 134252 338 10.942238 36.98476444 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.032   NTclustered gi|1557394408|emb|LR031564.1| 45931 g131432 i0 100 0.0828402366863905 28 0 8 0 303 330 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25922593 25922593 PRJEB20058_P_NODE_135468_length_336_cov_4.058182_g132648_i0 PRJEB20058 135468 336 4.058182 13.63549152 Diploscapter sp. JU359 479134 Nematoda Nematoda 575 1.5199999999999994e-159   NTclustered gi|158821895|gb|EU195959.1| 479134 g132648 i0 99.371 95.4285714285714 318 0 94 1 1 316 1205 888 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 32064 575 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
25923472 25923472 PRJEB20058_P_NODE_155420_length_306_cov_2.208163_g152597_i0 PRJEB20058 155420 306 2.208163 6.75697878 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g152597 i0 100 0.0915032679738562 28 0 9 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25925520 25925520 PRJEB20058_P_NODE_204124_length_253_cov_3.739583_g201300_i0 PRJEB20058 204124 253 3.739583 9.46114499 Rubzovinema sp. EIK-2 3076138 Nematoda Nematoda 241 4.56e-59   NTclustered gi|543891909|gb|KF155282.1| 1400286 g201300 i0 84.861 61.6324110671937 251 24 96 12 1 243 4675 4919 Rubzovinema sp. EIK-2013 isolate A.r. 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15593 241 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neotylenchidae Rubzovinema Rubzovinema sp. EIK-2013
25926592 25926592 PRJEB20058_P_NODE_233132_length_228_cov_3.658683_g230307_i0 PRJEB20058 233132 228 3.658683 8.34179724 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g230307 i0 100 0.12280701754386 28 0 12 0 199 226 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25929796 25929796 PRJEB20058_P_NODE_73660_length_484_cov_97.671395_g70884_i0 PRJEB20058 73660 484 97.671395 472.7295518 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.013   NTclustered gi|1557394408|emb|LR031564.1| 45931 g70884 i0 100 0.0599173553719008 29 0 6 0 456 484 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26059782 26059782 PRJEB20058_P_NODE_164357_length_294_cov_5.781116_g161534_i0 PRJEB20058 164357 294 5.781116 16.99648104 Strongyloides papillosus 174720 Nematoda Nematoda 158 5.6199999999999996e-34   NTclustered gi|687022678|emb|LM525592.1| 174720 g161534 i0 82.258 3.42176870748299 186 30 63 2 72 257 97633 97451 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000026 blastn 1006 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26066946 26066946 PRJEB20058_P_NODE_96229_length_416_cov_54.690141_g93427_i0 PRJEB20058 96229 416 54.690141 227.51098656 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.04   NTclustered gi|1557394408|emb|LR031564.1| 45931 g93427 i0 100 0.0673076923076923 28 0 7 0 389 416 52 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26157354 26157354 PRJEB20058_P_NODE_164461_length_294_cov_3.502146_g161638_i0 PRJEB20058 164461 294 3.502146 10.29630924 Rhabditida 6236 Nematoda Nematoda 80.5 1.25e-10   NTclustered gi|158821934|gb|EU195998.1| 479159 g161638 i0 79.661 0.986394557823129 118 19 39 5 21 135 3107 3222 Myctolaimus ulmi strain PDL20 28S ribosomal RNA gene, partial sequence blastn 290 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cylindrocorporidae Myctolaimus Myctolaimus ulmi
26195927 26195927 PRJEB20058_P_NODE_15870_length_1039_cov_120.652352_g14008_i0 PRJEB20058 15870 1039 120.652352 1253.57793728 Diploscapter sp. JU359 479134 Nematoda Nematoda 1881 0   NTclustered gi|158821895|gb|EU195959.1| 479134 g14008 i0 99.708 98.4302213666987 1027 2 99 1 13 1039 2295 1270 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 102269 1881 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
26198935 26198935 PRJEB20058_P_NODE_233390_length_228_cov_2.161677_g230565_i0 PRJEB20058 233390 228 2.161677 4.92862356 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g230565 i0 100 0.12280701754386 28 0 12 0 201 228 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26203394 26203394 PRJEB20058_P_NODE_99206_length_409_cov_5.422414_g96399_i0 PRJEB20058 99206 409 5.422414 22.17767326 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.039   NTclustered gi|1557394408|emb|LR031564.1| 45931 g96399 i0 100 0.0684596577017115 28 0 7 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26294489 26294489 PRJEB20058_P_NODE_32806_length_732_cov_8.087928_g30268_i0 PRJEB20058 32806 732 8.087928 59.20363296 Panagrolaimus 55784 Nematoda Nematoda 1101 0   NTclustered gi|166014126|gb|EU253569.1| 55785 g30268 i0 94.583 37.6939890710383 720 25 97 10 10 722 1615 2327 Panagrolaimus sp. PS1159 28S large subunit ribosomal RNA gene, partial sequence blastn 27592 1101 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159
26334943 26334943 PRJEB20058_P_NODE_239487_length_216_cov_9.161290_g236662_i0 PRJEB20058 239487 216 9.16129 19.7883864 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g236662 i0 100 0.12962962962963 28 0 13 0 179 206 51 24 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26335148 26335148 PRJEB20058_P_NODE_245999_length_202_cov_42.822695_g243174_i0 PRJEB20058 245999 202 42.822695 86.5018439 Steinernema feltiae 52066 Nematoda Nematoda 122 1.32e-23   NTclustered gi|221706450|gb|FJ584283.1| 52066 g243174 i0 86.607 4.7970297029703 112 14 55 1 7 117 1576 1465 Steinernema feltiae strain G26 heat shock protein 90 (HSP90) mRNA, complete cds blastn 969 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema feltiae
26335196 26335196 PRJEB20058_P_NODE_247399_length_200_cov_4.395683_g244574_i0 PRJEB20058 247399 200 4.395683 8.791366 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g244574 i0 100 0.14 28 0 14 0 172 199 53 26 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26335758 26335758 PRJEB20058_P_NODE_33671_length_723_cov_9.299094_g31112_i0 PRJEB20058 33671 723 9.299094 67.23244962 Panagrellus redivivus 6233 Nematoda Nematoda 717 0   NTclustered gi|1078555212|dbj|AP017464.1| 6233 g31112 i0 85.315 96.0484094052559 715 81 96 16 1 696 2273 2982 Panagrellus redivivus mitochondrial DNA, complete genome, strain: PS2298/MT8872 blastn 69443 717 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrellus Panagrellus redivivus
26338409 26338409 PRJEB20058_P_NODE_82687_length_454_cov_22.712468_g79903_i0 PRJEB20058 82687 454 22.712468 103.11460472 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.044   NTclustered gi|1557394408|emb|LR031564.1| 45931 g79903 i0 100 0.0616740088105727 28 0 6 0 427 454 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26466588 26466588 PRJEB20058_P_NODE_128512_length_348_cov_10.829268_g125693_i0 PRJEB20058 128512 348 10.829268 37.68585264 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 219 3.07e-52   NTclustered gi|2437461975|gb|ON496984.1| 6326 g125693 i0 78.771 44.1551724137931 358 53 97 16 1 338 6881 7235 Bursaphelenchus xylophilus isolate F0426-5 28S large subunit ribosomal RNA gene, partial sequence; and 28S-18S ribosomal RNA intergenic spacer, 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 15366 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
26466898 26466898 PRJEB20058_P_NODE_135280_length_336_cov_30.614545_g132460_i0 PRJEB20058 135280 336 30.614545 102.8648712 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.032   NTclustered gi|1557394408|emb|LR031564.1| 45931 g132460 i0 100 0.0833333333333333 28 0 8 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26470730 26470730 PRJEB20058_P_NODE_225344_length_237_cov_34.823864_g222519_i0 PRJEB20058 225344 237 34.823864 82.53255768 Pratylenchus vulnus 45931 Nematoda Nematoda 60.2 1.27e-4   NTclustered gi|1557394408|emb|LR031564.1| 45931 g222519 i0 100 0.135021097046413 32 0 14 0 31 62 24 55 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;