RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB20058" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB20058 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25514657 25514657 PRJEB20058_P_NODE_142825_length_324_cov_6.403042_g140004_i0 PRJEB20058 142825 324 6.403042 20.74585608 Globorotalia inflata 69028 SAR_Eukaryotes SAR_Eukaryotes 219 2.8399999999999994e-52   NTclustered gi|998623040|dbj|LC049319.1| 69028 g140004 i0 91.411 9.04938271604938 163 8 49 3 139 296 3654 3493 Globorotalia inflata gene for 28S rRNA, partial sequence, isolate: 11-9-T65 blastn 2932 219 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Globorotalia Globorotalia inflata
26467913 26467913 PRJEB20058_P_NODE_157400_length_303_cov_4.739669_g154577_i0 PRJEB20058 157400 303 4.739669 14.36119707 Pulleniatina obliquiloculata 225066 SAR_Eukaryotes SAR_Eukaryotes 309 1.5200000000000002e-79   NTclustered gi|998623044|dbj|LC049323.1| 225066 g154577 i0 86.806 55.1452145214521 288 24 91 11 21 295 4074 4360 Pulleniatina obliquiloculata gene for 28S rRNA, partial sequence, isolate: KH281 blastn 16709 309 1 Eukaryota Sar   Foraminifera   Rotaliida Pulleniatinidae Pulleniatina Pulleniatina obliquiloculata
26565956 26565956 PRJEB20058_P_NODE_220144_length_242_cov_4.867403_g217319_i0 PRJEB20058 220144 242 4.867403 11.77911526 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 115 2.7400000000000004e-21   NTclustered gi|998623043|dbj|LC049322.1| 51039 g217319 i0 98.462 21.7396694214876 65 1 27 0 93 157 3043 2979 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 5261 115 1 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;