RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB20058" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB20058 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25514256 25514256 PRJEB20058_P_NODE_134009_length_339_cov_1.669065_g131189_i0 PRJEB20058 134009 339 1.669065 5.65813035 Candidatus Protochlamydia amoebophila UWE25 264201 Bacteria Bacteria 363 1.3e-95   NTclustered gi|1691252667|emb|BX908798.2| 264201 g131189 i0 86.431 120.660766961652 339 37 99 9 1 334 1881413 1881747 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 40904 363 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
25515757 25515757 PRJEB20058_P_NODE_168249_length_289_cov_19.013158_g165426_i0 PRJEB20058 168249 289 19.013158 54.94802662 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 324 5.13e-84   NTclustered gi|2874253811|emb|OY969795.1| 464461 g165426 i0 88.321 93.8096885813149 274 27 93 5 1 270 655131 655403 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 27111 324 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
25924321 25924321 PRJEB20058_P_NODE_175876_length_280_cov_24.182648_g173053_i0 PRJEB20058 175876 280 24.182648 67.7114144 Chlamydiales bacterium QZY 2803004 Bacteria Bacteria 307 4.9900000000000007e-79   NTclustered gi|1955632013|gb|MW471098.1| 2803004 g173053 i0 88.933 83.0285714285714 253 23 89 3 9 258 600 350 Chlamydiales bacterium QZY 16S ribosomal RNA gene, partial sequence blastn 23248 307 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium QZY
25925473 25925473 PRJEB20058_P_NODE_20292_length_921_cov_10.920930_g18218_i0 PRJEB20058 20292 921 10.92093 100.5817653 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 675 0   NTclustered gi|2874253811|emb|OY969795.1| 464461 g18218 i0 80.876 0.942453854505972 868 156 94 10 35 897 2249683 2250545 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 868 675 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
26059581 26059581 PRJEB20058_P_NODE_159341_length_300_cov_30.744770_g156518_i0 PRJEB20058 159341 300 30.74477 92.23431 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 257 5.51e-64   NTclustered gi|1491674|emb|Y07555.1| 83552 g156518 i0 97.368 67.35 152 3 77 1 128 278 1251 1100 Parachlamydia acanthamoebae genomic LSU rRNA blastn 20205 257 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
26065226 26065226 PRJEB20058_P_NODE_62309_length_530_cov_8.682303_g59547_i0 PRJEB20058 62309 530 8.682303 46.0162059 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 505 3.319999999999999e-138   NTclustered gi|2874253688|emb|OY969414.1| 174324 g59547 i0 84.825 147.294339622642 514 65 96 10 1 509 2363933 2364438 MAG: uncultured Chlamydiales bacterium isolate MFD04463.bin.c.14 genome assembly, chromosome: 1 blastn 78066 505 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;