RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB17675" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB17675 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1295867 1295867 PRJEB17675_P_NODE_24362_length_154_cov_1.193277_g24058_i0 PRJEB17675 24362 154 1.193277 1.83764658 Strongyloides papillosus 174720 Nematoda Nematoda 113 5.72e-21   NTclustered gi|687022647|emb|LM525561.1| 174720 g24058 i0 83.333 11.487012987013 126 17 81 4 1 124 124926 124803 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000006 blastn 1769 113 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
2571541 2571541 PRJEB17675_P_NODE_24163_length_155_cov_1.000000_g23859_i0 PRJEB17675 24163 155 1 1.55 Strongyloides ratti 34506 Nematoda Nematoda 178 2.02e-40   NTclustered gi|1376157149|ref|XM_024646005.1| 34506 g23859 i0 87.582 51.0709677419355 153 19 99 0 1 153 1065 913 Strongyloides ratti 26S protease regulatory subunit 4 (SRAE_0000015400), partial mRNA blastn 7916 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8948685 8948685 PRJEB17675_P_NODE_24988_length_152_cov_1.017094_g24684_i0 PRJEB17675 24988 152 1.017094 1.54598288 Caenorhabditis elegans 6239 Nematoda Nematoda 124 2.5999999999999996e-24   NTclustered gi|399163138|gb|JQ235181.1| 6239 g24684 i0 81.757 13.5789473684211 148 27 97 0 5 152 227 80 Caenorhabditis elegans isolate GC5-1 rab-2 (unc-108) mRNA, partial cds blastn 2064 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11499735 11499735 PRJEB17675_P_NODE_9750_length_281_cov_1.463415_g9446_i0 PRJEB17675 9750 281 1.463415 4.11219615 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.002   NTclustered gi|1376142617|ref|XM_024651632.1| 34506 g9446 i0 100 0.270462633451957 30 0 11 0 125 154 1462 1491 Strongyloides ratti MIP20649p (SRAE_2000076000), partial mRNA blastn 76 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
16598535 16598535 PRJEB17675_P_NODE_9054_length_295_cov_3.680769_g8750_i0 PRJEB17675 9054 295 3.680769 10.85826855 Caenorhabditis remanei 31234 Nematoda Nematoda 58.4 5.88e-4   NTclustered gi|2445351206|ref|XM_003111984.2| 31234 g8750 i0 85 0.203389830508475 60 6 20 2 118 177 830 886 Caenorhabditis remanei uncharacterized protein (GCK72_002409), partial mRNA blastn 60 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
17873278 17873278 PRJEB17675_P_NODE_22795_length_160_cov_1.280000_g22491_i0 PRJEB17675 22795 160 1.28 2.048 Caenorhabditis briggsae 6238 Nematoda Nematoda 154 3.54e-33   NTclustered gi|268568589|ref|XM_002640248.1| 6238 g22491 i0 84.516 28.35625 155 24 97 0 6 160 707 553 Caenorhabditis briggsae Protein CBR-KIN-3 (Cbr-kin-3), partial mRNA blastn 4537 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
20422436 20422436 PRJEB17675_P_NODE_9877_length_278_cov_2.259259_g9573_i0 PRJEB17675 9877 278 2.259259 6.28074002 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.007   NTclustered gi|351058242|emb|FO080670.1| 6239 g9573 i0 100 0.413669064748201 29 0 10 0 85 113 5134 5162 Caenorhabditis elegans Cosmid T27E4, complete sequence blastn 115 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22973643 22973643 PRJEB17675_P_NODE_22399_length_162_cov_1.149606_g22095_i0 PRJEB17675 22399 162 1.149606 1.86236172 Brugia malayi 6279 Nematoda Nematoda 111 2.19e-20   NTclustered gi|2082284419|ref|XM_001901045.2| 6279 g22095 i0 79.141 17.3765432098765 163 32 100 2 1 162 277 438 Brugia malayi Uncharacterized protein (Bma-unc-108), partial mRNA blastn 2815 111 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;