RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJEB17675" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJEB17675 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6399774 6399774 PRJEB17675_P_NODE_15066_length_209_cov_1.379310_g14762_i0 PRJEB17675 15066 209 1.37931 2.8827579 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 200 6.18e-47   NTclustered gi|290972772|ref|XM_002669079.1| 5762 g14762 i0 85.714 0.904306220095694 189 27 90 0 21 209 37 225 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_54415), partial mRNA blastn 189 200 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6399788 6399788 PRJEB17675_P_NODE_19406_length_177_cov_2.253521_g19102_i0 PRJEB17675 19406 177 2.253521 3.98873217 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 267 4.9099999999999996e-67   NTclustered gi|290988433|ref|XM_002676880.1| 5762 g19102 i0 93.785 100.214689265537 177 11 100 0 1 177 336 160 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82621), mRNA blastn 17738 267 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12775242 12775242 PRJEB17675_P_NODE_21491_length_166_cov_1.236641_g21187_i0 PRJEB17675 21491 166 1.236641 2.05282406 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 267 4.559999999999999e-67   NTclustered gi|290972987|ref|XM_002669186.1| 5762 g21187 i0 95.758 62.355421686747 165 7 99 0 1 165 1070 1234 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56405), mRNA blastn 10351 267 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13739323 13739323 PRJEB17675_P_NODE_9331_length_289_cov_1.165354_g9027_i0 PRJEB17675 9331 289 1.165354 3.36787306 Naegleria 5761 Heterolobosea other_Eukaryota 529 1.01e-145   NTclustered gi|2651357780|gb|PP174296.1| 36333 g9027 i0 99.654 51.9723183391003 289 1 100 0 1 289 1932 2220 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15020 529 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
15323821 15323821 PRJEB17675_P_NODE_18913_length_180_cov_2.379310_g18609_i0 PRJEB17675 18913 180 2.37931 4.282758 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 224 3.06e-54   NTclustered gi|2031924363|emb|OD955780.1| 5763 g18609 i0 89.385 166.488888888889 179 17 99 2 3 180 1331 1508 Naegleria fowleri Karachi_NF001 strain blastn 29968 224 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
16598487 16598487 PRJEB17675_P_NODE_23794_length_156_cov_1.322314_g23490_i0 PRJEB17675 23794 156 1.322314 2.06280984 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 233 4.2799999999999995e-57   NTclustered gi|290974615|ref|XM_002669995.1| 5762 g23490 i0 93.59 3.98076923076923 156 10 100 0 1 156 705 860 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56383), mRNA blastn 621 233 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20422363 20422363 PRJEB17675_P_NODE_19597_length_176_cov_1.418440_g19293_i0 PRJEB17675 19597 176 1.41844 2.4964544 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 303 3.71e-78   NTclustered gi|84105356|gb|DQ295229.1| 5762 g19293 i0 97.727 95.9545454545455 176 4 100 0 1 176 803 628 Naegleria gruberi translation elongation factor 1 alpha (EF-1alpha) gene, partial cds blastn 16888 303 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22973649 22973649 PRJEB17675_P_NODE_24759_length_152_cov_2.051282_g24455_i0 PRJEB17675 24759 152 2.051282 3.11794864 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 165 1.5300000000000002e-36   NTclustered gi|2119440189|ref|XM_044694895.1| 51637 g24455 i0 87.857 3.38157894736842 140 17 92 0 2 141 1291 1430 Naegleria lovaniensis uncharacterized protein (C9374_005174), partial mRNA blastn 514 165 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
24247459 24247459 PRJEB17675_P_NODE_13400_length_226_cov_2.727749_g13096_i0 PRJEB17675 13400 226 2.727749 6.16471274 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 243 1.11e-59   NTclustered gi|290988433|ref|XM_002676880.1| 5762 g13096 i0 87.56 86.4646017699115 209 26 92 0 1 209 249 41 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_82621), mRNA blastn 19541 243 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;