RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJEB17675" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 16 ✖

tax_clade 1

bioproject 1

  • PRJEB17675 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2571559 2571559 PRJEB17675_P_NODE_4003_length_489_cov_2.960352_g3712_i0 PRJEB17675 4003 489 2.960352 14.47612128 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 363 1.9399999999999998e-95   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g3712 i0 81.779 52.7975460122699 461 59 91 21 34 478 32129 32580 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 25818 363 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
3847878 3847878 PRJEB17675_P_NODE_264_length_1587_cov_43.011598_g217_i0 PRJEB17675 264 1587 43.011598 682.59406026 Cochliopodium minus 313997 Discosea other_Eukaryota 2023 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g217 i0 91.152 49.645872715816 1537 60 95 51 68 1578 2240 754 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 78788 2023 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
3847913 3847913 PRJEB17675_P_NODE_9024_length_296_cov_1.839080_g8720_i0 PRJEB17675 9024 296 1.83908 5.4436768 Paramoeba aparasomata 2583407 Discosea other_Eukaryota 241 5.47e-59   NTclustered gi|1767098935|gb|MK518072.1| 2583407 g8720 i0 84.109 63.6182432432432 258 31 84 8 32 280 15246 14990 Paramoeba aparasomata mitochondrion, complete genome blastn 18831 241 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba aparasomata
5124044 5124044 PRJEB17675_P_NODE_14025_length_220_cov_1.097297_g13721_i0 PRJEB17675 14025 220 1.097297 2.4140534 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 137 5.23e-28   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g13721 i0 82.143 14.5454545454545 168 23 75 5 55 220 33760 33922 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 3200 137 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
7673948 7673948 PRJEB17675_P_NODE_4387_length_466_cov_51.846868_g4090_i0 PRJEB17675 4387 466 51.846868 241.60640488 Paramoeba perurans 437603 Discosea other_Eukaryota 267 1.4899999999999998e-66   NTclustered gi|145386786|gb|EF216911.1| 437603 g4090 i0 78.104 27.9785407725322 443 82 94 11 17 452 435 1 Neoparamoeba perurans strain GD-HAC/2/2 28S large subunit ribosomal RNA gene, partial sequence blastn 13038 267 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
8638944 8638944 PRJEB17675_P_NODE_20947_length_168_cov_3.030075_g20643_i0 PRJEB17675 20947 168 3.030075 5.090526 Cochliopodium 313557 Discosea other_Eukaryota 267 4.63e-67   NTclustered gi|330902891|gb|JF298270.1| 313997 g20643 i0 97.436 95.7738095238095 156 4 93 0 13 168 467 622 Cochliopodium minus clone 5201 actin gene, partial cds blastn 16090 267 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
8948652 8948652 PRJEB17675_P_NODE_15028_length_209_cov_2.063218_g14724_i0 PRJEB17675 15028 209 2.063218 4.31212562 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.018   NTclustered gi|470393215|ref|XM_004334806.1| 1257118 g14724 i0 100 0.133971291866029 28 0 13 0 126 153 342 369 Acanthamoeba castellanii str. Neff splicing factor, CC1like subfamily protein (ACA1_093880), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8948686 8948686 PRJEB17675_P_NODE_268_length_1575_cov_45.092857_g217_i1 PRJEB17675 268 1575 45.092857 710.21249775 Cochliopodium minus 313997 Discosea other_Eukaryota 2032 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g217 i1 91.373 51.0869841269841 1530 58 95 50 68 1566 2240 754 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 80462 2032 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
12775228 12775228 PRJEB17675_P_NODE_1891_length_713_cov_78.069322_g1665_i0 PRJEB17675 1891 713 78.069322 556.63426586 Cochliopodium minus 313997 Discosea other_Eukaryota 1013 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g1665 i0 94.939 52.312762973352 652 21 91 9 62 711 4 645 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 37299 1013 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
15013710 15013710 PRJEB17675_P_NODE_5052_length_431_cov_2.277778_g4753_i0 PRJEB17675 5052 431 2.277778 9.81722318 Ripella 1217112 Discosea other_Eukaryota 693 0   NTclustered gi|399764203|gb|JQ271714.1| 1217114 g4753 i0 98.477 99.0696055684455 394 5 91 1 37 430 474 82 Ripella sp. DP13 18S ribosomal RNA gene, partial sequence blastn 42699 693 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. DP13
19147144 19147144 PRJEB17675_P_NODE_24036_length_155_cov_1.450000_g23732_i0 PRJEB17675 24036 155 1.45 2.2475 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 237 3.2800000000000004e-58   NTclustered gi|330902885|gb|JF298267.1| 1017091 g23732 i0 94.737 98.0967741935484 152 8 98 0 1 152 361 512 Cochliopodium larifeili clone 1805 actin gene, partial cds blastn 15205 237 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
20422324 20422324 PRJEB17675_P_NODE_10297_length_271_cov_1.720339_g9993_i0 PRJEB17675 10297 271 1.720339 4.66211869 Vannella sp. GERB 1002216 Discosea other_Eukaryota 431 2.729999999999999e-116   NTclustered gi|327391626|gb|HM363624.1| 1002216 g9993 i0 96.226 98.4354243542435 265 7 97 3 1 264 631 893 Vannella sp. GERB small subunit ribosomal RNA gene, partial sequence blastn 26676 431 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERB
20422392 20422392 PRJEB17675_P_NODE_3717_length_508_cov_3.627907_g3432_i0 PRJEB17675 3717 508 3.627907 18.42976756 Vannella simplex 197532 Discosea other_Eukaryota 804 0   NTclustered gi|284192611|gb|GQ265409.1| 197532 g3432 i0 95.472 100.454724409449 508 15 100 6 1 508 305 804 Vannella simplex strain L4A Cl 4/1/2 clone A147.6 18S ribosomal RNA gene, partial sequence blastn 51031 804 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
20422397 20422397 PRJEB17675_P_NODE_4357_length_468_cov_4.168591_g4060_i0 PRJEB17675 4357 468 4.168591 19.50900588 Cochliopodium minus 313997 Discosea other_Eukaryota 728 0   NTclustered gi|330902893|gb|JF298271.1| 313997 g4060 i0 94.85 97.6517094017094 466 24 99 0 1 466 636 1101 Cochliopodium minus clone 5202 actin gene, partial cds blastn 45701 728 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
21387967 21387967 PRJEB17675_P_NODE_13517_length_225_cov_1.673684_g13213_i0 PRJEB17675 13517 225 1.673684 3.765789 Vannellidae 95227 Discosea other_Eukaryota 388 1.34e-103   NTclustered gi|33946343|gb|AY294150.1| 197527 g13213 i0 97.778 100.288888888889 225 5 100 0 1 225 1051 827 Platyamoeba placida small subunit ribosomal RNA gene, partial sequence blastn 22565 388 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
22973666 22973666 PRJEB17675_P_NODE_4579_length_454_cov_86.718377_g4282_i0 PRJEB17675 4579 454 86.718377 393.70143158 Vannella sp. 1973054 Discosea other_Eukaryota 621 2.6699999999999997e-173   NTclustered gi|1858337158|gb|MT621571.1| 1973054 g4282 i0 90.985 87.5418502202643 477 20 100 12 1 454 195 671 Vannella sp. isolate VWR2 small subunit ribosomal RNA gene, partial sequence blastn 39744 621 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;