RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB17675" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB17675 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
985837 985837 PRJEB17675_P_NODE_12241_length_240_cov_2.507317_g11937_i0 PRJEB17675 12241 240 2.507317 6.0175608 Chytridiomycetes 451435 Fungi Fungi 189 1.58e-43   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g11937 i0 81.982 88.7375 222 40 93 0 1 222 284 505 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 21297 189 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
5124094 5124094 PRJEB17675_P_NODE_4285_length_472_cov_4.670481_g3988_i0 PRJEB17675 4285 472 4.670481 22.04467032 Polychytrium aggregatum 110093 Fungi Fungi 440 8.389999999999998e-119   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g3988 i0 84.738 88.9661016949153 439 67 93 0 34 472 578 140 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 41992 440 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
6399796 6399796 PRJEB17675_P_NODE_23746_length_156_cov_1.652893_g23442_i0 PRJEB17675 23746 156 1.652893 2.57851308 Monoblepharella sp. M15 252809 Fungi Fungi 82.4 1.64e-11   NTclustered gi|82792147|gb|DQ282605.1| 252809 g23442 i0 78.195 11.7628205128205 133 25 84 4 18 148 505 635 Monoblepharella sp. M15 isolate AFTOL-ID 25 elongation factor 1-alpha (EF1-alpha) gene, partial cds blastn 1835 82.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharella Monoblepharella sp. M15
6399803 6399803 PRJEB17675_P_NODE_2546_length_618_cov_5.238422_g2301_i0 PRJEB17675 2546 618 5.238422 32.37344796 Spizellomyces punctatus 109760 Fungi Fungi 252 5.63e-62   NTclustered gi|1026980085|ref|XM_016752373.1| 645134 g2301 i0 80.606 6.22168284789644 330 61 53 3 112 440 508 181 Spizellomyces punctatus DAOM BR117 40S ribosomal protein S15 (SPPG_04127), mRNA blastn 3845 252 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;