RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB17675" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB17675 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1295819 1295819 PRJEB17675_P_NODE_11162_length_256_cov_1.990950_g10858_i0 PRJEB17675 11162 256 1.99095 5.096832 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 440 4.249999999999998e-119   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g10858 i0 97.656 87.05078125 256 6 100 0 1 256 666661 666916 Bdellovibrio sp. qaytius chromosome, complete genome blastn 22285 440 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
12465033 12465033 PRJEB17675_P_NODE_9370_length_288_cov_1.873518_g9066_i0 PRJEB17675 9370 288 1.873518 5.39573184 Bacteriovorax 146784 Bacteria Bacteria 279 1.12e-70   NTclustered gi|1700689994|gb|CP030035.1| 960 g9066 i0 86.26 260.888888888889 262 30 90 6 30 288 1660621 1660363 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 75136 279 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;