RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB17675" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJEB17675 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21720 21720 PRJEB17675_P_NODE_9001_length_296_cov_4.268199_g8697_i0 PRJEB17675 9001 296 4.268199 12.63386904 Haliovirga abyssi 2996794 Bacteria Bacteria 89.8 2.09e-13   NTclustered gi|2502752323|dbj|AP027059.1| 2996794 g8697 i0 86.207 143.327702702703 87 6 28 5 193 274 254290 254375 Fusobacteria bacterium IC12 DNA, complete genome blastn 42425 89.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Haliovirgaceae Haliovirga Haliovirga abyssi
7673939 7673939 PRJEB17675_P_NODE_3507_length_525_cov_4.077551_g3225_i0 PRJEB17675 3507 525 4.077551 21.40714275 Fusobacterium gonidiaformans 849 Bacteria Bacteria 230 2.219999999999999e-55   NTclustered gi|1370530246|gb|CP028106.1| 469615 g3225 i0 75.746 117.849523809524 536 87 99 32 7 525 308054 308563 Fusobacterium gonidiaformans ATCC 25563 chromosome, complete genome blastn 61871 230 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans
14049810 14049810 PRJEB17675_P_NODE_24992_length_152_cov_1.017094_g24688_i0 PRJEB17675 24992 152 1.017094 1.54598288 Fusobacterium varium 856 Bacteria Bacteria 261 1.9e-65   NTclustered gi|1540073569|emb|LR134390.1| 856 g24688 i0 98 531.019736842105 150 3 99 0 3 152 2850133 2849984 Fusobacterium varium strain NCTC10560 genome assembly, chromosome: 1 blastn 80715 261 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;