RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB17675" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB17675 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21654 21654 PRJEB17675_P_NODE_14121_length_219_cov_1.081522_g13817_i0 PRJEB17675 14121 219 1.081522 2.36853318 Calycomorphotria hydatis 2528027 Bacteria Bacteria 56.5 0.001   NTclustered gi|1712520392|gb|CP036316.1| 2528027 g13817 i0 96.97 0.150684931506849 33 1 15 0 35 67 4882516 4882548 Calycomorphotria hydatis strain V22 chromosome blastn 33 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Calycomorphotria Calycomorphotria hydatis
1295825 1295825 PRJEB17675_P_NODE_13202_length_229_cov_1.092784_g12898_i0 PRJEB17675 13202 229 1.092784 2.50247536 Victivallales bacterium 2212475 Bacteria Bacteria 60.2 1.22e-4   NTclustered gi|2622071908|emb|OY787460.1| 2212475 g12898 i0 94.737 0.165938864628821 38 2 17 0 157 194 5064585 5064548 MAG: Victivallales bacterium isolate c43507a4-3b0a-454f-a213-a96987c4837a genome assembly, chromosome: 1 blastn 38 60.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
8948672 8948672 PRJEB17675_P_NODE_2008_length_695_cov_1.769697_g1775_i0 PRJEB17675 2008 695 1.769697 12.29939415 Singulisphaera acidiphila 466153 Bacteria Bacteria 69.4 6.89e-7   NTclustered gi|430012750|gb|CP003364.1| 886293 g1775 i0 83.333 0.112230215827338 78 10 11 1 8 85 2170727 2170801 Singulisphaera acidiphila DSM 18658, complete genome blastn 78 69.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila
16598493 16598493 PRJEB17675_P_NODE_25074_length_151_cov_1.724138_g24770_i0 PRJEB17675 25074 151 1.724138 2.60344838 Frigoriglobus tundricola 2774151 Bacteria Bacteria 158 2.54e-34   NTclustered gi|1870286614|gb|CP053452.2| 2774151 g24770 i0 85.526 27.8476821192053 152 21 100 1 1 151 4960131 4959980 Frigoriglobus tundricola strain PL17 chromosome, complete genome blastn 4205 158 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Frigoriglobus Frigoriglobus tundricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;