RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB15333" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB15333 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2571495 2571495 PRJEB15333_P_NODE_8063_length_235_cov_7.150538_g7979_i0 PRJEB15333 8063 235 7.150538 16.8037643 Aplysia californica 6500 Mollusca Mollusca 52.8 0.021   NTclustered gi|1897936549|ref|XM_005106389.3| 6500 g7979 i0 100 0.119148936170213 28 0 12 0 208 235 3673 3646 PREDICTED: Aplysia californica RRP12-like protein (LOC101856684), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
15013691 15013691 PRJEB15333_P_NODE_19952_length_163_cov_0.912281_g19868_i0 PRJEB15333 19952 163 0.912281 1.48701803 Metazoa 33208 Mollusca Mollusca 54.7 0.004   NTclustered gi|2912998015|dbj|AP039603.1| 145626 g19868 i0 96.875 0.54601226993865 32 1 20 0 55 86 11562135 11562166 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 22, sequence blastn 89 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24247446 24247446 PRJEB15333_P_NODE_2860_length_368_cov_5.476489_g2776_i0 PRJEB15333 2860 368 5.476489 20.15347952 Bradybaena similaris 145626 Mollusca Mollusca 58.4 7.51e-4   NTclustered gi|2912993551|dbj|AP039598.1| 145626 g2776 i0 94.595 0.5 37 2 10 0 19 55 57045237 57045273 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 17, sequence blastn 184 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;