RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJEB15333" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJEB15333 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
985830 985830 PRJEB15333_P_NODE_11461_length_201_cov_1.572368_g11377_i0 PRJEB15333 11461 201 1.572368 3.16045968 Alpharetrovirus 153057 Viruses Viruses 366 5.5e-97   NTclustered gi|407979|gb|L10923.1|MAVTYP1A2A 31668 g11377 i0 99.502 99.6417910447761 201 1 100 0 1 201 1984 1784 Myeloblastosis-associated virus type 1/2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 20028 366 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
2261124 2261124 PRJEB15333_P_NODE_13782_length_185_cov_2.139706_g13698_i0 PRJEB15333 13782 185 2.139706 3.9584561 Alpharetrovirus 153057 Viruses Viruses 302 1.42e-77   NTclustered gi|308053557|gb|HM235670.1| 11864 g13698 i0 96.196 98.6054054054054 184 7 99 0 2 185 2654 2471 Avian leukosis virus isolate YZ9902, complete genome blastn 18242 302 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
2261128 2261128 PRJEB15333_P_NODE_3382_length_343_cov_2.255102_g3298_i0 PRJEB15333 3382 343 2.255102 7.73499986 Alpharetrovirus 153057 Viruses Viruses 592 1.5499999999999996e-164   NTclustered gi|449139009|gb|KC149971.1| 11864 g3298 i0 97.947 99.4256559766764 341 7 99 0 1 341 2011 2351 Avian leukosis virus strain SCAU11-XG, complete genome blastn 34103 592 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
2571488 2571488 PRJEB15333_P_NODE_14123_length_183_cov_2.328358_g14039_i0 PRJEB15333 14123 183 2.328358 4.26089514 Alpharetrovirus avileu 3426267 Viruses Viruses 329 6.43e-86   NTclustered gi|1041529576|gb|KU500038.1| 11864 g14039 i0 99.448 98.9071038251366 181 1 99 0 3 183 4147 3967 Avian leukosis virus isolate GD1411-1 envelope protein (env) and gag protein (gag) genes, complete cds; and pol protein (pol) gene, partial cds blastn 18100 329 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
3536435 3536435 PRJEB15333_P_NODE_15583_length_175_cov_1.658730_g15499_i0 PRJEB15333 15583 175 1.65873 2.9027775 Alpharetrovirus 153057 Viruses Viruses 300 4.77e-77   NTclustered gi|345050319|dbj|AB522906.1| 11864 g15499 i0 97.701 99.4285714285714 174 4 99 0 1 174 4539 4366 Avian leukosis virus proviral DNA, complete genome blastn 17400 300 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
3847803 3847803 PRJEB15333_P_NODE_1464_length_486_cov_5.249428_g1384_i0 PRJEB15333 1464 486 5.249428 25.51222008 Tasmanian devil retrovirus 1332312 Viruses Viruses 787 0   NTclustered gi|618757818|gb|KC845928.1| 1332312 g1384 i0 95.902 100.954732510288 488 17 99 2 2 486 2063 1576 Tasmanian devil retrovirus strain DRV2010 polymerase (pol) and envelope protein (env) genes, partial cds blastn 49064 787 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Tasmanian devil retrovirus
5124023 5124023 PRJEB15333_P_NODE_9285_length_221_cov_8.500000_g9201_i0 PRJEB15333 9285 221 8.5 18.785 Avian myeloblastosis-associated virus 11960 Viruses Viruses 298 2.28e-76   NTclustered gi|407987|gb|L10924.1|MAVTYP2AAA 31670 g9201 i0 91.855 30.262443438914 221 6 100 1 1 221 7512 7304 Myeloblastosis-associated virus type 2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 6688 298 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
7363537 7363537 PRJEB15333_P_NODE_866_length_602_cov_4.054250_g793_i0 PRJEB15333 866 602 4.05425 24.406585 Alpharetrovirus 153057 Viruses Viruses 1042 0   NTclustered gi|407979|gb|L10923.1|MAVTYP1A2A 31668 g793 i0 97.851 100.5 605 10 100 1 1 602 1342 738 Myeloblastosis-associated virus type 1/2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 60501 1042 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
8948623 8948623 PRJEB15333_P_NODE_7268_length_247_cov_1.919192_g7184_i0 PRJEB15333 7268 247 1.919192 4.74040424 Alpharetrovirus avileu 3426267 Viruses Viruses 429 8.83e-116   NTclustered gi|2654355796|gb|OR670961.1| 11864 g7184 i0 97.976 99.9959514170041 247 5 100 0 1 247 2608 2854 Avian leukosis virus strain CH/JXND2101, complete genome blastn 24699 429 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
9914005 9914005 PRJEB15333_P_NODE_21948_length_151_cov_20.303922_g21864_i0 PRJEB15333 21948 151 20.303922 30.65892222 root 1 Root_unresolved Root_unresolved 278 1.87e-70   NTclustered gi|699361943|gb|KM376510.1| 11864 g21864 i0 100 99.3509933774834 150 0 99 0 2 151 4560 4709 Avian leukosis virus isolate HLJ13SH01, complete genome blastn 15002 278 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
10224371 10224371 PRJEB15333_P_NODE_9289_length_221_cov_6.843023_g9205_i0 PRJEB15333 9289 221 6.843023 15.12308083 Alpharetrovirus avimyebla 3426268 Viruses Viruses 344 2.8899999999999993e-90   NTclustered gi|210085|gb|M24159.1|ALMAMV 11866 g9205 i0 96.618 93.6018099547511 207 7 94 0 3 209 402 196 Avian myeloblastosis virus polymerase gene, 3' end and transforming protein gene, complete cds blastn 20686 344 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avimyebla
12465004 12465004 PRJEB15333_P_NODE_21990_length_151_cov_4.166667_g21906_i0 PRJEB15333 21990 151 4.166667 6.29166717 Alpharetrovirus 153057 Viruses Viruses 261 1.88e-65   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g21906 i0 98.639 93.7483443708609 147 2 97 0 5 151 7152 7006 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 14156 261 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;