RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB14803" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB14803 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3847544 3847544 PRJEB14803_P_NODE_11804_length_366_cov_2.392749_g11339_i0 PRJEB14803 11804 366 2.392749 8.75746134 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 62.1 5.77e-5   NTclustered gi|154411722|ref|XM_001578846.1| 412133 g11339 i0 92.857 0.311475409836066 42 3 11 0 322 363 486 445 Trichomonas vaginalis G3 RNA polymerase II transcription regulator recruiting protein (TVAGG3_0288500), partial mRNA blastn 114 62.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
11499544 11499544 PRJEB14803_P_NODE_41290_length_162_cov_1.732283_g40824_i0 PRJEB14803 41290 162 1.732283 2.80629846 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 139 1.01e-28   NTclustered gi|2794868929|ref|XM_067917821.1| 135588 g40824 i0 82.39 47.2839506172839 159 28 98 0 4 162 254 96 Histomonas meleagridis Histone H2A (GO595_004665), partial mRNA blastn 7660 139 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;