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contig_metadata

28 rows where analysis = "blastn", bioproject = "PRJEB14803" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 28 ✖

tax_clade 1

bioproject 1

  • PRJEB14803 · 28 ✖

analysis 1

  • blastn · 28 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21540 21540 PRJEB14803_P_NODE_38861_length_168_cov_2.105263_g38395_i0 PRJEB14803 38861 168 2.105263 3.53684184 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 165 1.74e-36   NTclustered gi|813157874|ref|XM_012346896.1| 695850 g38395 i0 85.276 1.20238095238095 163 21 96 2 6 166 34 195 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 202 165 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
2571383 2571383 PRJEB14803_P_NODE_38283_length_170_cov_1.288889_g37817_i0 PRJEB14803 38283 170 1.288889 2.1911113 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 183 4.829999999999999e-42   NTclustered gi|2795022921|ref|XM_067929966.1| 4785 g37817 i0 86.391 3.98823529411765 169 21 99 2 1 168 495 662 Phytophthora cinnamomi Nucleolar GTP-binding protein 1 (IUM83_05808), partial mRNA blastn 678 183 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6088916 6088916 PRJEB14803_P_NODE_2605_length_890_cov_42.595322_g2306_i0 PRJEB14803 2605 890 42.595322 379.0983658 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 411 1.29e-109   NTclustered gi|813150484|ref|XM_012345499.1| 695850 g2306 i0 77.842 61.514606741573 695 132 77 17 156 839 752 69 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S3a-2 mRNA blastn 54748 411 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
6399586 6399586 PRJEB14803_P_NODE_25686_length_219_cov_1.146739_g25220_i0 PRJEB14803 25686 219 1.146739 2.51135841 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 324 3.72e-84   NTclustered gi|698784774|ref|XM_009827129.1| 112090 g25220 i0 93.548 7.6027397260274 217 14 99 0 3 219 348 132 Aphanomyces astaci hypothetical protein mRNA blastn 1665 324 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
6399692 6399692 PRJEB14803_P_NODE_5726_length_575_cov_96.875926_g5306_i0 PRJEB14803 5726 575 96.875926 557.0365745 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.65e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g5306 i0 80.533 58.8313043478261 375 65 64 4 180 547 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8948478 8948478 PRJEB14803_P_NODE_33128_length_186_cov_1.324503_g32662_i0 PRJEB14803 33128 186 1.324503 2.46357558 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 113 7.19e-21   NTclustered gi|698797145|ref|XM_009833300.1| 112090 g32662 i0 85.849 1.6989247311828 106 15 57 0 1 106 496 601 Aphanomyces astaci hypothetical protein mRNA blastn 316 113 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8948591 8948591 PRJEB14803_P_NODE_8028_length_468_cov_29.170901_g7570_i0 PRJEB14803 8028 468 29.170901 136.51981668 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 78.7 7.5e-10   NTclustered gi|695382888|ref|XM_009519246.1| 67593 g7570 i0 100 0.514957264957265 42 0 9 0 234 275 398 357 Phytophthora sojae hypothetical protein mRNA blastn 241 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10224280 10224280 PRJEB14803_P_NODE_47189_length_151_cov_0.853448_g46723_i0 PRJEB14803 47189 151 0.853448 1.28870648 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.003   NTclustered gi|673027361|ref|XM_008869420.1| 157072 g46723 i0 100 0.19205298013245 29 0 19 0 123 151 2601 2629 Aphanomyces invadans hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
11189149 11189149 PRJEB14803_P_NODE_26149_length_216_cov_1.646409_g25683_i0 PRJEB14803 26149 216 1.646409 3.55624344 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 115 2.4e-21   NTclustered gi|813142232|ref|XM_012343833.1| 695850 g25683 i0 85.088 1.05555555555556 114 16 52 1 99 211 49 162 Saprolegnia parasitica CBS 223.65 ADP-ribosylation factor mRNA blastn 228 115 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11499403 11499403 PRJEB14803_P_NODE_14930_length_313_cov_42.571942_g14464_i0 PRJEB14803 14930 313 42.571942 133.25017846 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 555 1.8299999999999998e-153   NTclustered gi|698793876|ref|XR_717098.1| 112090 g14464 i0 98.718 100.466453674121 312 4 99 0 1 312 2408 2097 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 31446 555 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
11499556 11499556 PRJEB14803_P_NODE_43310_length_158_cov_1.300813_g42844_i0 PRJEB14803 43310 158 1.300813 2.05528454 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 209 7.32e-50   NTclustered gi|673038275|ref|XM_008874877.1| 157072 g42844 i0 91.946 14.0253164556962 149 12 94 0 10 158 289 141 Aphanomyces invadans 60S ribosomal protein L27a mRNA blastn 2216 209 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
12775046 12775046 PRJEB14803_P_NODE_31491_length_192_cov_1.369427_g31025_i0 PRJEB14803 31491 192 1.369427 2.62929984 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 91.6 3.5e-14   NTclustered gi|673036871|ref|XM_008874175.1| 157072 g31025 i0 90.141 0.598958333333333 71 5 36 2 16 84 470 400 Aphanomyces invadans 40S ribosomal protein S28 mRNA blastn 115 91.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
12775069 12775069 PRJEB14803_P_NODE_3591_length_749_cov_4.620448_g3241_i0 PRJEB14803 3591 749 4.620448 34.60715552 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 60.2 4.49e-4   NTclustered gi|675181624|ref|XM_008901449.1| 761204 g3241 i0 94.737 0.141522029372497 38 2 5 0 712 749 141 104 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 106 60.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
13739279 13739279 PRJEB14803_P_NODE_4051_length_698_cov_32.090498_g3681_i0 PRJEB14803 4051 698 32.090498 223.99167604 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 477 9.699999999999999e-130   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g3681 i0 85.621 64.0114613180516 459 61 65 4 89 545 28 483 Pythium splendens calmodulin mRNA, complete cds blastn 44680 481 0.991683991683992 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
15323684 15323684 PRJEB14803_P_NODE_41573_length_162_cov_0.944882_g41107_i0 PRJEB14803 41573 162 0.944882 1.53070884 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 209 7.56e-50   NTclustered gi|698796443|ref|XM_009832949.1| 112090 g41107 i0 90.184 2.00617283950617 163 12 99 3 2 162 362 522 Aphanomyces astaci 40S ribosomal protein S8 mRNA blastn 325 209 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16598287 16598287 PRJEB14803_P_NODE_28454_length_204_cov_4.739645_g27988_i0 PRJEB14803 28454 204 4.739645 9.6688758 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 339 1.22e-88   NTclustered gi|256009645|gb|GQ374534.1| 112090 g27988 i0 96.569 96.8333333333333 204 7 100 0 1 204 393 190 Aphanomyces astaci strain Gb04 28S ribosomal RNA gene, partial sequence blastn 19754 339 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
17563654 17563654 PRJEB14803_P_NODE_21894_length_243_cov_10.418269_g21428_i0 PRJEB14803 21894 243 10.418269 25.31639367 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 93.5 1.29e-14   NTclustered gi|66270188|gb|AY961478.1| 4787 g21428 i0 78.231 2.31275720164609 147 30 60 2 38 183 5 150 Phytophthora infestans clone MY-09-A-12 ribosomal protein L39 mRNA, complete cds blastn 562 93.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
17563677 17563677 PRJEB14803_P_NODE_38314_length_170_cov_1.185185_g37848_i0 PRJEB14803 38314 170 1.185185 2.0148145 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 154 3.79e-33   NTclustered gi|2795060703|ref|XM_067931468.1| 4785 g37848 i0 83.529 66.6529411764706 170 22 98 6 1 167 1048 882 Phytophthora cinnamomi Pre-mRNA-processing-splicing factor 8 (IUM83_07197), partial mRNA blastn 11331 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17873196 17873196 PRJEB14803_P_NODE_7095_length_503_cov_3.750000_g6642_i0 PRJEB14803 7095 503 3.75 18.8625 Globisporangium violae 82952 SAR_Eukaryotes SAR_Eukaryotes 132 6.14e-26   NTclustered gi|402245546|gb|JQ734404.1| 82952 g6642 i0 83.108 5.16898608349901 148 21 29 4 130 276 442 586 Pythium violae strain c3-08 NADH dehydrogenase subunit 1 gene, partial cds; mitochondrial blastn 2600 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium violae
18837598 18837598 PRJEB14803_P_NODE_26455_length_214_cov_2.631285_g25989_i0 PRJEB14803 26455 214 2.631285 5.6309499 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 363 7.669999999999997e-96   NTclustered gi|166051677|emb|CU353805.1| 100861 g25989 i0 97.196 98.3364485981308 214 6 100 0 1 214 87 300 Aphanomyces euteiches cDNA blastn 21044 363 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19146928 19146928 PRJEB14803_P_NODE_23616_length_231_cov_2.382653_g23150_i0 PRJEB14803 23616 231 2.382653 5.50392843 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 128 3.3299999999999998e-25   NTclustered gi|2248513156|ref|NC_063798.1| 325452 g23150 i0 79.459 14.4415584415584 185 35 80 2 29 213 31884 31703 Phytophthora kernoviae isolate 00844/4 mitochondrion, complete genome blastn 3336 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
19147012 19147012 PRJEB14803_P_NODE_44616_length_155_cov_1.666667_g44150_i0 PRJEB14803 44616 155 1.666667 2.58333385 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 154 3.4e-33   NTclustered gi|2795050879|ref|XM_067944282.1| 4785 g44150 i0 84.516 7.39354838709677 155 24 100 0 1 155 663 509 Phytophthora cinnamomi Mitochondrial Carrier (MC) Family (IUM83_19238), partial mRNA blastn 1146 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21387900 21387900 PRJEB14803_P_NODE_10857_length_386_cov_3.282051_g10392_i0 PRJEB14803 10857 386 3.282051 12.66871686 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 706 0   NTclustered gi|363498776|gb|JN662487.1| 120398 g10392 i0 99.74 99.9844559585492 385 1 99 0 1 385 337 721 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 38594 713 0.990182328190743 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
21387905 21387905 PRJEB14803_P_NODE_1217_length_1277_cov_7.169887_g1035_i0 PRJEB14803 1217 1277 7.169887 91.55945699 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 141 2.71e-28   NTclustered gi|2248513440|ref|NC_063805.1| 4781 g1035 i0 74.142 7.66092404072044 379 81 29 16 106 476 977 608 Plasmopara halstedii isolate 710 mitochondrion, complete genome blastn 9783 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
21387939 21387939 PRJEB14803_P_NODE_39537_length_166_cov_139.526718_g39071_i0 PRJEB14803 39537 166 139.526718 231.61435188 Aquastella 1495611 SAR_Eukaryotes SAR_Eukaryotes 285 1.26e-72   NTclustered gi|629632980|gb|KF294792.1| 1495612 g39071 i0 97.59 99.9457831325301 166 4 100 0 1 166 1385 1550 Aquastella attenuata isolate SL45 18S ribosomal RNA gene, partial sequence blastn 16591 285 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aquastella Aquastella attenuata
21698120 21698120 PRJEB14803_P_NODE_24458_length_226_cov_1.774869_g23992_i0 PRJEB14803 24458 226 1.774869 4.01120394 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 69.4 2e-7   NTclustered gi|669152965|ref|XM_008613823.1| 1156394 g23992 i0 93.478 0.389380530973451 46 3 20 0 2 47 364 409 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 88 69.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
22973311 22973311 PRJEB14803_P_NODE_11699_length_368_cov_4.264264_g11234_i0 PRJEB14803 11699 368 4.264264 15.69249152 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 372 2.36e-98   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g11234 i0 85.915 52.1983695652174 355 42 95 8 1 350 1314 1665 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 19209 372 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22973396 22973396 PRJEB14803_P_NODE_23679_length_231_cov_1.632653_g23213_i0 PRJEB14803 23679 231 1.632653 3.77142843 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 176 1.17e-39   NTclustered gi|189085004|gb|BT032536.1| 4784 g23213 i0 81.567 36.8095238095238 217 36 93 4 1 215 728 942 Phytophthora capsici clone CBOU53-D02 mRNA sequence blastn 8503 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;