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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB14803" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14803 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3536420 3536420 PRJEB14803_P_NODE_5823_length_569_cov_17.629213_g5399_i0 PRJEB14803 5823 569 17.629213 100.31022197 Opisthokonta 33154 Nematoda Nematoda 392 2.91e-104   NTclustered gi|150984495|gb|EF634890.1| 452809 g5399 i0 83.816 67.1652021089631 414 65 73 2 49 461 435 23 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 38217 394 0.99492385786802 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
6399696 6399696 PRJEB14803_P_NODE_6006_length_558_cov_14.923518_g5576_i0 PRJEB14803 6006 558 14.923518 83.27323044 Pristionchus hoplostomus 1355913 Nematoda Nematoda 159 3.1499999999999993e-34   NTclustered gi|524845304|gb|KC819362.1| 1355913 g5576 i0 79.556 3.1326164874552 225 44 40 2 133 356 37 260 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 35 (rpl-35) mRNA, partial cds blastn 1748 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
7673706 7673706 PRJEB14803_P_NODE_33687_length_184_cov_1.409396_g33221_i0 PRJEB14803 33687 184 1.409396 2.59328864 Strongyloides ratti 34506 Nematoda Nematoda 54.7 0.004   NTclustered gi|1376135301|ref|XM_024647662.1| 34506 g33221 i0 100 0.309782608695652 29 0 16 0 89 117 2079 2051 Strongyloides ratti Proteinase inhibitor I2, Kunitz metazoa domain-containing protein (SRAE_1000078600), partial mRNA blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8948538 8948538 PRJEB14803_P_NODE_45448_length_154_cov_1.008403_g44982_i0 PRJEB14803 45448 154 1.008403 1.55294062 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.013   NTclustered gi|351020631|emb|FO080287.1| 6239 g44982 i0 100 1.27272727272727 28 0 18 0 32 59 14960 14933 Caenorhabditis elegans Cosmid R09A1, complete sequence blastn 196 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12775042 12775042 PRJEB14803_P_NODE_31091_length_193_cov_2.189873_g30625_i0 PRJEB14803 31091 193 2.189873 4.22645489 Caenorhabditis remanei 31234 Nematoda Nematoda 150 5.74e-32   NTclustered gi|2445348377|ref|XM_003109331.2| 31234 g30625 i0 82.558 3.26943005181347 172 28 89 2 23 193 734 564 Caenorhabditis remanei uncharacterized protein (GCK72_000822), partial mRNA blastn 631 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
17873132 17873132 PRJEB14803_P_NODE_41775_length_161_cov_1.587302_g41309_i0 PRJEB14803 41775 161 1.587302 2.55555622 Sachsia zurstrasseni 1538730 Nematoda Nematoda 119 1.3e-22   NTclustered gi|675119121|gb|KJ877440.1| 1538730 g41309 i0 82.707 3.8695652173913 133 23 83 0 4 136 82 214 Sachsia zurstrasseni small subunit ribosomal protein 27 (rps-27) mRNA, partial cds blastn 623 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sachsia Sachsia zurstrasseni
21387924 21387924 PRJEB14803_P_NODE_28457_length_204_cov_3.934911_g27991_i0 PRJEB14803 28457 204 3.934911 8.02721844 Rhabditida 6236 Nematoda Nematoda 191 3.61e-44   NTclustered gi|380447938|gb|JQ074059.1| 34510 g27991 i0 84.184 67.593137254902 196 31 96 0 9 204 101 296 Heterodera avenae actin 2 mRNA, complete cds blastn 13789 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera avenae
21698151 21698151 PRJEB14803_P_NODE_27558_length_209_cov_1.367816_g27092_i0 PRJEB14803 27558 209 1.367816 2.85873544 Bursaphelenchus mucronatus 6325 Nematoda Nematoda 183 6.229999999999998e-42   NTclustered gi|255098668|gb|FJ555023.1| 6325 g27092 i0 83.854 58.2727272727273 192 31 92 0 18 209 677 868 Bursaphelenchus mucronatus heat shock protein 70 (hsp70) mRNA, complete cds blastn 12179 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus mucronatus
21698229 21698229 PRJEB14803_P_NODE_43318_length_158_cov_1.300813_g42852_i0 PRJEB14803 43318 158 1.300813 2.05528454 Caenorhabditis elegans 6239 Nematoda Nematoda 115 1.6400000000000002e-21   NTclustered gi|3642544|emb|Z83108.1| 6239 g42852 i0 83.607 26.4746835443038 122 20 77 0 1 122 9608 9729 Caenorhabditis elegans Cosmid F44E5, complete sequence blastn 4183 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22973416 22973416 PRJEB14803_P_NODE_26539_length_214_cov_1.564246_g26073_i0 PRJEB14803 26539 214 1.564246 3.34748644 Diplogasteroides magnus 560213 Nematoda Nematoda 104 5.13e-18   NTclustered gi|256709249|gb|GQ422277.1| 560213 g26073 i0 86.458 1.47663551401869 96 11 44 2 110 204 22 116 Diplogasteroides magnus small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 316 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteroididae Diplogasteroides Diplogasteroides magnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;