RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB14803" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14803 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6399623 6399623 PRJEB14803_P_NODE_33406_length_185_cov_1.333333_g32940_i0 PRJEB14803 33406 185 1.333333 2.46666605 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 54.7 0.004   NTclustered gi|585684706|ref|XM_006819941.1| 10224 g32940 i0 94.286 0.340540540540541 35 2 19 0 63 97 4121 4087 PREDICTED: Saccoglossus kowalevskii DNA excision repair protein ERCC-6-like (LOC100373376), mRNA blastn 63 54.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
20422112 20422112 PRJEB14803_P_NODE_20357_length_256_cov_1.583710_g19891_i0 PRJEB14803 20357 256 1.58371 4.0542976 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 187 6.1099999999999985e-43   NTclustered gi|585642766|ref|XM_002730426.2| 10224 g19891 i0 80 24.33984375 255 49 99 2 3 256 496 243 PREDICTED: Saccoglossus kowalevskii ribose-phosphate pyrophosphokinase 1-like (LOC100371548), mRNA blastn 6231 187 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
23938176 23938176 PRJEB14803_P_NODE_32759_length_187_cov_1.842105_g32293_i0 PRJEB14803 32759 187 1.842105 3.44473635 Metazoa 33208 Hemichordata other_Eukaryota 54.7 0.004   NTclustered gi|2875697383|ref|XM_070681843.1| 63121 g32293 i0 100 0.775401069518717 29 0 16 0 94 122 4533 4505 PREDICTED: Ptychodera flava E3 ubiquitin-protein ligase TRIP12-like (LOC139118513), transcript variant X6, mRNA blastn 145 54.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;